Hi Steggen,
On Mon, Jan 30, 2012 at 12:22 AM, Steffen Neumann <sneumann at ipb-halle.de> wrote:
Hi, a while ago one of the packages I am involved in (xcms) turned "red" for the check on windows builds. As there was no commit from our side at or before the failure, it must be some other interaction or side-effect. Getting the output of the actual RUnit test failure would be an enormous help, and has the top rank on my wishlist for the build machines.
What you see in the build report is the full output of
R CMD check
as well as the contents of the file 00install.out.
I ran the check for xcms manually and I see that R crashes with the
following output:
ERROR
Running the tests in 'tests/doRUnit.R' failed.
Last 13 lines of output:
Loading required package: caTools
Loading required package: bitops
3: >C:\Users\BIOCBU~1\AppData\Local\Temp\5\RtmpsnCFwB/ko15.mzData
tracemem[0x0000000008140960 -> 0x0000000008140960]: data.frame eval
evalq rcpp_doTryCatc
h rcpp_tryCatch .External <Anonymous> .local header header mzRRawData
xcmsRaw func system.
time doTryCatch tryCatchOne tryCatchList tryCatch try .executeTestCase
.sourceTestFile run
TestSuite
Timing stopped at: 12.75 0.22 12.97
Error in structure(list(message = as.character(message), call = call), :
value of 'SET_ATTRIB' must be a pairlist or NULL, not a 'character'
In addition: There were 50 or more warnings (use warnings() to see
the first 50)
done successfully.
Executing test function test.rawMat ...
I'll look into this further, but there isn't much of a way for us to
capture the output when R crashes unexpectedly.
Dan
Yours, Steffen -- IPB Halle ? ? ? ? ? ? ? ? ? ?AG Massenspektrometrie & Bioinformatik Dr. Steffen Neumann ? ? ? ? ?http://www.IPB-Halle.DE Weinberg 3 ? ? ? ? ? ? ? ? ? http://msbi.bic-gh.de 06120 Halle ? ? ? ? ? ? ? ? ?Tel. +49 (0) 345 5582 - 1470 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?+49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE ? ? Fax. +49 (0) 345 5582 - 1409
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