[Bioc-devel] Build error accessing cache of ExperimentHub on windows platform - Bioc-devel

Wed, Oct 26, 2022 2:39 AM #

Dear Bioconductor developers/maintainers,

A build error related to accessing the cache of ExperimentHub occurred just in windows platform (my package depends on ?easierData? package which contains ExperimentHub objects).
My package ?easier? used was installing, building and checking correctly in all multiple platforms until this week.
Could you help me out understanding what happened?

Thanks in advance,
Cheers, ?scar

Shepherd, Lori

Wed, Oct 26, 2022 5:50 AM #

I went onto Palamino4 and tested your vignette code manually and it seemed to work fine.  Do you know how long you have been getting this ERROR on windows?  I think it should clear up on its own but if you consistently see it occurring, we can investigate further.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

Dolors Pelegrí

Wed, Oct 26, 2022 5:54 AM #

Hello,

Related to this e-mail, I have seen the same error in methylclock package
that depends on methylclockData package. The error appeared in the last
build.

Best,

Dolors


El mi?, 26 oct 2022 a las 14:50, Kern, Lori (<Lori.Shepherd at roswellpark.org>)
escribi?:

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Lapuente
Santana, Oscar via Bioc-devel <bioc-devel at r-project.org>
Sent: Wednesday, October 26, 2022 5:39 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Build error accessing cache of ExperimentHub on
windows platform

Dear Bioconductor developers/maintainers,

A build error related to accessing the cache of ExperimentHub occurred
just in windows platform (my package depends on ?easierData? package which
contains ExperimentHub objects).
My package ?easier? used was installing, building and checking correctly
in all multiple platforms until this week.
Could you help me out understanding what happened?

Thanks in advance,
Cheers, ?scar





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Lapuente Santana, Oscar

Thu, Oct 27, 2022 4:46 AM #

The error seems to be fixed now :) This just happened in one of the reports, unsure what was the error.

From: Dolors Pelegr? <dolors.pelegri at isglobal.org>
Date: Wednesday, 26 October 2022 at 14:54
To: "Kern, Lori" <Lori.Shepherd at roswellpark.org>
Cc: "bioc-devel at r-project.org" <bioc-devel at r-project.org>, "Lapuente Santana, Oscar" <o.lapuente.santana at tue.nl>
Subject: Re: [Bioc-devel] Build error accessing cache of ExperimentHub on windows platform

Hello,

Related to this e-mail, I have seen the same error in methylclock package that depends on methylclockData package. The error appeared in the last build.

Best,

Dolors

El mi?, 26 oct 2022 a las 14:50, Kern, Lori (<Lori.Shepherd at roswellpark.org<mailto:Lori.Shepherd at roswellpark.org>>) escribi?:
I went onto Palamino4 and tested your vignette code manually and it seemed to work fine.  Do you know how long you have been getting this ERROR on windows?  I think it should clear up on its own but if you consistently see it occurring, we can investigate further.

Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces at r-project.org<mailto:bioc-devel-bounces at r-project.org>> on behalf of Lapuente Santana, Oscar via Bioc-devel <bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>>
Sent: Wednesday, October 26, 2022 5:39 AM
To: bioc-devel at r-project.org<mailto:bioc-devel at r-project.org> <bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>>
Subject: [Bioc-devel] Build error accessing cache of ExperimentHub on windows platform

Dear Bioconductor developers/maintainers,

A build error related to accessing the cache of ExperimentHub occurred just in windows platform (my package depends on ?easierData? package which contains ExperimentHub objects).
My package ?easier? used was installing, building and checking correctly in all multiple platforms until this week.
Could you help me out understanding what happened?

Thanks in advance,
Cheers, ?scar





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