Hi everyone, I would like to update the miRBaseVersions.db annotation package in devel version. It now contains the most recent miRBase release version 22, from the 12th of March 2018, for mature miRNAs as well as precursor miRNAs. It can be downloaded from the following google drive repository: https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing The most recently developed version is also available on GitHub: https://github.com/StefanHaunsberger/mirbaseversions.db Thanks, Stefan
[Bioc-devel] Update of miRBaseVersions.db annotation package
5 messages · Stefan Haunsberger, Van Twisk, Daniel
1 day later
I'd be happy to update your annotation package. The package, however, appears to have multiple warnings and errors occurring on check and BiocCheck. There appear to be some documentation issues and a test failure in check. For BiocCheck, just be sure the BiocViews you are using are from one category, the other warning is fine. Please email once these issues are addressed and I can propagate the changes.
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefan Haunsberger <stefan.haunsberger at gmail.com>
Sent: Thursday, April 5, 2018 1:39:21 PM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] Update of miRBaseVersions.db annotation package
Sent: Thursday, April 5, 2018 1:39:21 PM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] Update of miRBaseVersions.db annotation package
Hi everyone, I would like to update the miRBaseVersions.db annotation package in devel version. It now contains the most recent miRBase release version 22, from the 12th of March 2018, for mature miRNAs as well as precursor miRNAs. It can be downloaded from the following google drive repository: https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing The most recently developed version is also available on GitHub: https://github.com/StefanHaunsberger/mirbaseversions.db Thanks, Stefan [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Hi, thanks for your fast reply. I've fixed the issues and get no error messages when running BiocCheck. This is the updated version: https://drive.google.com/open?id=1rJcs2W5fcfc0Cq74QHfNfk0mu2xJ5JJ9 Thanks and kind regards, Stefan On Fri, Apr 6, 2018 at 7:58 PM Van Twisk, Daniel <
Daniel.VanTwisk at roswellpark.org> wrote:
I'd be happy to update your annotation package. The package, however, appears to have multiple warnings and errors occurring on check and BiocCheck. There appear to be some documentation issues and a test failure in check. For BiocCheck, just be sure the BiocViews you are using are from one category, the other warning is fine. Please email once these issues are addressed and I can propagate the changes. ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefan Haunsberger <stefan.haunsberger at gmail.com> *Sent:* Thursday, April 5, 2018 1:39:21 PM *To:* bioc-devel at r-project.org *Subject:* [Bioc-devel] Update of miRBaseVersions.db annotation package Hi everyone, I would like to update the miRBaseVersions.db annotation package in devel version. It now contains the most recent miRBase release version 22, from the 12th of March 2018, for mature miRNAs as well as precursor miRNAs. It can be downloaded from the following google drive repository: https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing The most recently developed version is also available on GitHub: https://github.com/StefanHaunsberger/mirbaseversions.db Thanks, Stefan [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
2 days later
The package looks okay now. I've moved the package onto our devel builder and it should propagate within a day or two.
From: Stefan Haunsberger <stefan.haunsberger at gmail.com>
Sent: Saturday, April 7, 2018 9:36:02 AM
To: Van Twisk, Daniel
Cc: bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Update of miRBaseVersions.db annotation package
Sent: Saturday, April 7, 2018 9:36:02 AM
To: Van Twisk, Daniel
Cc: bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Update of miRBaseVersions.db annotation package
Hi, thanks for your fast reply. I've fixed the issues and get no error messages when running BiocCheck. This is the updated version: https://drive.google.com/open?id=1rJcs2W5fcfc0Cq74QHfNfk0mu2xJ5JJ9 Thanks and kind regards, Stefan On Fri, Apr 6, 2018 at 7:58 PM Van Twisk, Daniel <Daniel.VanTwisk at roswellpark.org<mailto:Daniel.VanTwisk at roswellpark.org>> wrote: I'd be happy to update your annotation package. The package, however, appears to have multiple warnings and errors occurring on check and BiocCheck. There appear to be some documentation issues and a test failure in check. For BiocCheck, just be sure the BiocViews you are using are from one category, the other warning is fine. Please email once these issues are addressed and I can propagate the changes. ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org<mailto:bioc-devel-bounces at r-project.org>> on behalf of Stefan Haunsberger <stefan.haunsberger at gmail.com<mailto:stefan.haunsberger at gmail.com>> Sent: Thursday, April 5, 2018 1:39:21 PM To: bioc-devel at r-project.org<mailto:bioc-devel at r-project.org> Subject: [Bioc-devel] Update of miRBaseVersions.db annotation package Hi everyone, I would like to update the miRBaseVersions.db annotation package in devel version. It now contains the most recent miRBase release version 22, from the 12th of March 2018, for mature miRNAs as well as precursor miRNAs. It can be downloaded from the following google drive repository: https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing The most recently developed version is also available on GitHub: https://github.com/StefanHaunsberger/mirbaseversions.db Thanks, Stefan [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Thanks very much, I appreciate! On Mon, Apr 9, 2018 at 7:45 PM Van Twisk, Daniel <
Daniel.VanTwisk at roswellpark.org> wrote:
The package looks okay now. I've moved the package onto our devel builder and it should propagate within a day or two. ------------------------------ *From:* Stefan Haunsberger <stefan.haunsberger at gmail.com> *Sent:* Saturday, April 7, 2018 9:36:02 AM *To:* Van Twisk, Daniel *Cc:* bioc-devel at r-project.org *Subject:* Re: [Bioc-devel] Update of miRBaseVersions.db annotation package Hi, thanks for your fast reply. I've fixed the issues and get no error messages when running BiocCheck. This is the updated version: https://drive.google.com/open?id=1rJcs2W5fcfc0Cq74QHfNfk0mu2xJ5JJ9 Thanks and kind regards, Stefan On Fri, Apr 6, 2018 at 7:58 PM Van Twisk, Daniel < Daniel.VanTwisk at roswellpark.org> wrote: I'd be happy to update your annotation package. The package, however, appears to have multiple warnings and errors occurring on check and BiocCheck. There appear to be some documentation issues and a test failure in check. For BiocCheck, just be sure the BiocViews you are using are from one category, the other warning is fine. Please email once these issues are addressed and I can propagate the changes. ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefan Haunsberger <stefan.haunsberger at gmail.com> *Sent:* Thursday, April 5, 2018 1:39:21 PM *To:* bioc-devel at r-project.org *Subject:* [Bioc-devel] Update of miRBaseVersions.db annotation package Hi everyone, I would like to update the miRBaseVersions.db annotation package in devel version. It now contains the most recent miRBase release version 22, from the 12th of March 2018, for mature miRNAs as well as precursor miRNAs. It can be downloaded from the following google drive repository: https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing The most recently developed version is also available on GitHub: https://github.com/StefanHaunsberger/mirbaseversions.db Thanks, Stefan [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.