[Bioc-devel] bioctitle issue for Rmd

On my mac and linux systems I am seeing a new

error.  With the latest checkout of BiocStyle


rmarkdown::render("foo/BiocStyle/vignettes/AuthoringRmdVignettes.Rmd",
BiocStyle::pdf_document())


produced


! Undefined control sequence.

l.56 \bioctitle

                []{Authoring R Markdown vignettes}


Error: Failed to compile AuthoringRmdVignettes.tex. See
https://urldefense.proofpoint.com/v2/url?u=https-3A__yihui.org_tinytex_r_-23debugging&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=QQEy7hX7LwNRfF2vOZqRi_8FzxYRlsfwkrE-ikutFo8&s=DK8vF4FSB0aOHaOmdcHCs_2qILx4O70kCr3gdn2oWyg&e=  for debugging tips. See
AuthoringRmdVignettes.log for more info.

sessionInfo()

R Under development (unstable) (2019-12-06 r77536)

Platform: x86_64-pc-linux-gnu (64-bit)

Running under: Debian GNU/Linux 10 (buster)


Matrix products: default

BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.3.5.so


locale:

  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C

  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8

  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=C

  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C

  [9] LC_ADDRESS=C               LC_TELEPHONE=C

[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C


attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods   base


other attached packages:

[1] BiocStyle_2.15.2    rmarkdown_2.0       BiocManager_1.30.10


loaded via a namespace (and not attached):

  [1] Rcpp_1.0.3      bookdown_0.16   digest_0.6.23   magrittr_1.5

  [5] evaluate_0.14   rlang_0.4.2     stringi_1.4.3   tools_4.0.0

  [9] stringr_1.4.0   tinytex_0.18    xfun_0.11       yaml_2.2.0

[13] compiler_4.0.0  htmltools_0.4.0 knitr_1.26

On my mac and linux systems I am seeing a new

error. With the latest checkout of BiocStyle


rmarkdown::render("foo/BiocStyle/vignettes/AuthoringRmdVignettes.Rmd",
BiocStyle::pdf_document())


produced


! Undefined control sequence.

l.56 \bioctitle

[]{Authoring R Markdown vignettes}


Error: Failed to compile AuthoringRmdVignettes.tex. See
https://urldefense.proofpoint.com/v2/url?u=https-3A__yihui.org_tinytex_r_-23debugging&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=QQEy7hX7LwNRfF2vOZqRi_8FzxYRlsfwkrE-ikutFo8&s=DK8vF4FSB0aOHaOmdcHCs_2qILx4O70kCr3gdn2oWyg&e= for debugging tips. See
AuthoringRmdVignettes.log for more info.

sessionInfo()

R Under development (unstable) (2019-12-06 r77536)

Platform: x86_64-pc-linux-gnu (64-bit)

Running under: Debian GNU/Linux 10 (buster)


Matrix products: default

BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.3.5.so


locale:

[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C

[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8

[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=C

[7] LC_PAPER=en_US.UTF-8 LC_NAME=C

[9] LC_ADDRESS=C LC_TELEPHONE=C

[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C


attached base packages:

[1] stats graphics grDevices utils datasets methods base


other attached packages:

[1] BiocStyle_2.15.2 rmarkdown_2.0 BiocManager_1.30.10


loaded via a namespace (and not attached):

[1] Rcpp_1.0.3 bookdown_0.16 digest_0.6.23 magrittr_1.5

[5] evaluate_0.14 rlang_0.4.2 stringi_1.4.3 tools_4.0.0

[9] stringr_1.4.0 tinytex_0.18 xfun_0.11 yaml_2.2.0

[13] compiler_4.0.0 htmltools_0.4.0 knitr_1.26