Dear Bioconductor Developers,
I received an email that my package "pwOmics" gets an error in the check under Linux.
Install and build gets an OK, but check shows an error.
I had a look and the problem seems to be:
> BiocGenerics:::testPackage("pwOmics")
Error in library("RUnit", quietly = TRUE) :
there is no package called 'RUnit'
Calls: <Anonymous> -> library
Execution halted
I checked and the RUnit package is still available on Bioconductor and can still be installed. So I can't fully understand the error message. Could you help me resolve this error message?
Thank you for the support!
Kind regards
Maren
------------------------------------------------------
NGS Integrative Genomics (NIG), Core Unit
Department of Human Genetics
University Medical Center G?ttingen (UMG)
Justus-von-Liebig-Weg 11, 37077 G?ttingen, Germany
Contact : 0551 39-60778
[Bioc-devel] pwOmics package get error message for Linux check
4 messages · Sitte, Maren, Martin Grigorov
Hi, On Tue, 8 Aug 2023 at 12:32, Sitte, Maren <Maren.Sitte at med.uni-goettingen.de> wrote:
Dear Bioconductor Developers, I received an email that my package "pwOmics" gets an error in the check under Linux. Install and build gets an OK, but check shows an error. I had a look and the problem seems to be:
> BiocGenerics:::testPackage("pwOmics")
Error in library("RUnit", quietly = TRUE) :
there is no package called 'RUnit'
Calls: <Anonymous> -> library
Execution halted
I checked and the RUnit package is still available on Bioconductor and can
still be installed. So I can't fully understand the error message. Could
you help me resolve this error message?
You need to add RUnit in the list of ?Suggests? in the DESCRIPTION file. Regards, Martin
Thank you for the support!
Kind regards
Maren
------------------------------------------------------
NGS Integrative Genomics (NIG), Core Unit
Department of Human Genetics
University Medical Center G?ttingen (UMG)
Justus-von-Liebig-Weg 11, 37077 G?ttingen, Germany
Contact : 0551 39-60778
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Dear Martin, thank you very much for the quick response. I will apply your advice and add the package to "Suggests". Kind regards Maren ------------------------------------------------------ NGS Integrative Genomics (NIG), Core Unit Department of Human Genetics University Medical Center G?ttingen (UMG) Justus-von-Liebig-Weg 11, 37077 G?ttingen, Germany Contact : 0551 39-60778
Von: Martin Grigorov <martin.grigorov at gmail.com>
Gesendet: Dienstag, 8. August 2023 14:36:27
An: Sitte, Maren
Cc: Schoeps, Torsten; bioc-devel at r-project.org
Betreff: [+externe Mail+] Re: [Bioc-devel] pwOmics package get error message for Linux check
Hi,
On Tue, 8 Aug 2023 at 12:32, Sitte, Maren <Maren.Sitte at med.uni-goettingen.de<mailto:Maren.Sitte at med.uni-goettingen.de>> wrote:
Dear Bioconductor Developers,
I received an email that my package "pwOmics" gets an error in the check under Linux.
Install and build gets an OK, but check shows an error.
I had a look and the problem seems to be:
> BiocGenerics:::testPackage("pwOmics")
Error in library("RUnit", quietly = TRUE) :
there is no package called 'RUnit'
Calls: <Anonymous> -> library
Execution halted
I checked and the RUnit package is still available on Bioconductor and can still be installed. So I can't fully understand the error message. Could you help me resolve this error message?
You need to add RUnit in the list of ?Suggests? in the DESCRIPTION file.
Regards,
Martin
Thank you for the support!
Kind regards
Maren
------------------------------------------------------
NGS Integrative Genomics (NIG), Core Unit
Department of Human Genetics
University Medical Center G?ttingen (UMG)
Justus-von-Liebig-Weg 11, 37077 G?ttingen, Germany
Contact : 0551 39-60778
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
1 day later
Dear Maren, Do you need more help with this ? Both https://code.bioconductor.org/browse/pwOmics/commits/devel and https://github.com/MarenS2/pwOmics don't have the change yet. Regards, Martin On Tue, Aug 8, 2023 at 3:39?PM Sitte, Maren <
Maren.Sitte at med.uni-goettingen.de> wrote:
Dear Martin, thank you very much for the quick response. I will apply your advice and add the package to "Suggests". Kind regards Maren ------------------------------------------------------ NGS Integrative Genomics (NIG), Core Unit Department of Human Genetics University Medical Center G?ttingen (UMG) Justus-von-Liebig-Weg 11, 37077 G?ttingen, Germany Contact : 0551 39-60778 ------------------------------ *Von:* Martin Grigorov <martin.grigorov at gmail.com> *Gesendet:* Dienstag, 8. August 2023 14:36:27 *An:* Sitte, Maren *Cc:* Schoeps, Torsten; bioc-devel at r-project.org *Betreff:* [+externe Mail+] Re: [Bioc-devel] pwOmics package get error message for Linux check Hi, On Tue, 8 Aug 2023 at 12:32, Sitte, Maren < Maren.Sitte at med.uni-goettingen.de> wrote:
Dear Bioconductor Developers, I received an email that my package "pwOmics" gets an error in the check under Linux. Install and build gets an OK, but check shows an error. I had a look and the problem seems to be:
> BiocGenerics:::testPackage("pwOmics")
Error in library("RUnit", quietly = TRUE) :
there is no package called 'RUnit'
Calls: <Anonymous> -> library
Execution halted
I checked and the RUnit package is still available on Bioconductor and
can still be installed. So I can't fully understand the error message.
Could you help me resolve this error message?
You need to add RUnit in the list of ?Suggests? in the DESCRIPTION file. Regards, Martin
Thank you for the support!
Kind regards
Maren
------------------------------------------------------
NGS Integrative Genomics (NIG), Core Unit
Department of Human Genetics
University Medical Center G?ttingen (UMG)
Justus-von-Liebig-Weg 11, 37077 G?ttingen, Germany
Contact : 0551 39-60778
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel