We are wrapping up some release related tasks. I will be in touch over the next week about further steps and to coordinate. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Alex Ochoa, Ph.D. <alejandro.ochoa at duke.edu>
Sent: Friday, April 28, 2023 1:57 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Going "nuclear" with `lfa` and `gcatest` packages
Sent: Friday, April 28, 2023 1:57 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Going "nuclear" with `lfa` and `gcatest` packages
Dear bioc-devel, It appears I need the "nuclear" option for the `lfa` and `gcatest` packages, as it was described in the contributor's guide: https://secure-web.cisco.com/1jvS3acI6XeNG1F7SwJXPNNVufUmXvm4gf2v_1pWiRB-9OFwxix2QYm9m-pzUpIo6YGVD1Bbe8KXhtUp9XAPMAkkdzS42rzvNhyn2dvIvOUJBE8uNpgtV-EHXaVRy9qDxHItgb9SDBg8oEwOQo5QVGqttwUuYEuOs_OX_fDm4XO9EsIpVyMcmFVy1XFNRdQE1ZI-uklUpLZ2VWjODXJjRF6MDeyqKWyMK2xww4Rx2A2xijeo7SgxoS-eDCg7NT2qC8t2WnUWV8XN1dcm8sSSl6IF-IMpQB590Vp9U8InrHWVp0ZtTnYeRw_gRgEeOoyBi/https%3A%2F%2Fcontributions.bioconductor.org%2Fgit-version-control.html%23abandon-changes I took over `lfa` and `gcatest` internally almost 3 years ago and have made tons of commits on the GitHub versions since. However, until last month I didn't have access to the Bioconductor git versions. These Bioconductor versions have always had unrelated histories (starting back when Bioconductor used SVN); the original maintainer pushed some updates that were manually reproduced from his GitHub version, but in general the GitHub versions are the main ones, whereas the Bioconductor-only updates are reserved to version bumps. It doesn't make sense for me to try to merge the two histories, I'd rather completely overwrite (a la "git push -f") the Bioconductor versions with the GitHub ones, and maintain them synced from now on. For `lfa` I just tried `git push -f upstream devel`, and got the following expected error: remote: Resolving deltas: 100% (330/330), done. remote: FATAL: + refs/heads/devel packages/lfa a.ochoa DENIED by fallthru remote: error: hook declined to update refs/heads/devel To git.bioconductor.org:packages/lfa.git ! [remote rejected] devel -> devel (hook declined) error: failed to push some refs to 'git.bioconductor.org:packages/lfa.git' The guide says I must contact you to "abandon changes", "start fresh", "go nuclear", so let me know what to do next! Thanks! -Alex _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1dwCWP5ne_ZTlxHGPA6HIEesVjOc6VGEfuDbmdULHQzJ3SAtUtOC7cuvT61Ri7jLUIUFdpSCvMOcfbb--NzML_7yxojlTJgiaXwfdkXDyIO06ECO4frvgTMVmp9YVdoeTgC0oWLmOJKs13h25adyGffdy_sDMLVYLyFPyaC2VLNk1xrIpeSWjuBEPZlRZGC297uc60pnunD30U5j0RjB_Z3YZ5WsLOjdgsXGGHopiWAmCVRm7beqnDPOI7JqCdNqBACNlUE-Ls6DxinShSfoWP2Du1-ycdwTEh4YGVTLQGS_8tid6sna9SDGCj4D6dVKu/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.