[Bioc-devel] (persistent) issue with rgl dependency on Windows server - Bioc-devel

Fri, Oct 9, 2015 1:47 AM #

Hi Dan,

After submitting the newest version of flowcatchR (with the updated 
NEWS), I noticed that an issue with the rgl package dependency is 
(again/still) there.

Is this a recurring bug in the build system?

Will it affect somehow what happens with the upcoming release?

Thanks in advance for the time!

Cheers,
Federico

Federico Marini, M.Sc.
Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI)
Division Biostatistics and Bioinformatics
University Medical Center of the Johannes Gutenberg University Mainz
Postal address: 55101 Mainz
Office and delivery address: Obere Zahlbacher Str. 69, 55131 Mainz

Phone: +49 (0) 6131 17-8108
Fax: +49 (0) 6131 17-2968
Web: www.imbei.uni-mainz.de
E-Mail: marinif at uni-mainz.de

Dan Tenenbaum

Fri, Oct 9, 2015 8:34 AM #

----- Original Message -----

Yes.

No.

Dan

Federico Marini

Fri, Oct 9, 2015 8:38 AM #

On 09.10.15 17:34, Dan Tenenbaum wrote:

Ok, it's probably all I need to know.

Thanks for getting promptly back to me!

Federico

Federico Marini, M.Sc.
Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI)
Division Biostatistics and Bioinformatics
University Medical Center of the Johannes Gutenberg University Mainz
Postal address: 55101 Mainz
Office and delivery address: Obere Zahlbacher Str. 69, 55131 Mainz

Phone: +49 (0) 6131 17-8108
Fax: +49 (0) 6131 17-2968
Web: www.imbei.uni-mainz.de
E-Mail: marinif at uni-mainz.de

Alexandra Popa

Fri, Oct 9, 2015 2:46 PM #

Dear Bioc-devel users,
I am pleased to announce my first Bioconductor package: _/RiboProfiling/_:

http://bioconductor.org/packages/3.2/RiboProfiling/

/_RiboProfiling_/ offers a series of tools for ribo-seq data analysis. 
It represents an R implementation of a ribosome profiling pipeline from 
a BAM file, to P-site recalibration, and coverage both of ORFs and 
codons. The packages' graphical functionalities (implemented with 
ggplot2) offer a quality assessment of the data and results' 
representations across the analyses.

I welcome all your comments and feed-back on this package, and I thank 
you in advance for any suggestion that will help me improve it.

Sincerely yours,

Alexandra Popa