Hi all, We had a couple manifest files that were needing to be cleaned out to pass BiocCheck and were removed using the BFG. I?d like to request a reset/force pull upstream into the BioC devel git server repo (git at git.bioconductor.org:packages/compartmap<mailto:git at git.bioconductor.org:packages/compartmap>) to commit various bugfixes and API changes for compartmap. Thanks so much! Best, Ben K Johnson Postdoctoral Fellow Department of Epigenetics Van Andel Institute 333 Bostwick Ave. NE Grand Rapids, MI 49503
[Bioc-devel] BFG clean-up and reset for compartmap
4 messages · Johnson, Ben, Nitesh Turaga
1 day later
Hi, What exactly is the github repo we have to pull from? Nitesh From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Johnson, Ben <Ben.Johnson at vai.org> Date: Monday, May 10, 2021 at 3:11 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] BFG clean-up and reset for compartmap Hi all, We had a couple manifest files that were needing to be cleaned out to pass BiocCheck and were removed using the BFG. I?d like to request a reset/force pull upstream into the BioC devel git server repo (git at git.bioconductor.org:packages/compartmap<mailto:git at git.bioconductor.org:packages/compartmap>) to commit various bugfixes and API changes for compartmap. Thanks so much! Best, Ben K Johnson Postdoctoral Fellow Department of Epigenetics Van Andel Institute 333 Bostwick Ave. NE Grand Rapids, MI 49503
Hi Nitesh, It would be https://github.com/biobenkj/compartmap. Thanks! Best, Ben K Johnson Postdoctoral Fellow Department of Epigenetics Van Andel Institute 333 Bostwick Ave. NE Grand Rapids, MI 49503 From: Nitesh Turaga <nturaga.bioc at gmail.com> Date: Tuesday, May 11, 2021 at 2:01 PM To: Johnson, Ben <Ben.Johnson at vai.org>, bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [External] Re: BFG clean-up and reset for compartmap Hi, What exactly is the github repo we have to pull from? Nitesh From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Johnson, Ben <Ben.Johnson at vai.org> Date: Monday, May 10, 2021 at 3:11 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] BFG clean-up and reset for compartmap Hi all, We had a couple manifest files that were needing to be cleaned out to pass BiocCheck and were removed using the BFG. I?d like to request a reset/force pull upstream into the BioC devel git server repo (git at git.bioconductor.org:packages/compartmap<mailto:git at git.bioconductor.org:packages/compartmap>) to commit various bugfixes and API changes for compartmap. Thanks so much! Best, Ben K Johnson Postdoctoral Fellow Department of Epigenetics Van Andel Institute 333 Bostwick Ave. NE Grand Rapids, MI 49503 CAUTION: This email was sent from outside of the organization (nturaga.bioc at gmail.com). Do not click links or open attachments unless you recognize the sender and know the content is safe. If you have any questions, please contact ServiceDesk at vai.org<mailto:servicedesk at vai.org>.
Hi, Thanks for sending the github repo. I noticed that the repo is missing the RELEASE branches. You?ll have to sync this from the Bioconductor repo. I cannot merge just a orphan devel branch into what exists on git.bioconductor.org. You?ll have to have sync your github repo, sync all the branches and run BFG. Best, Nitesh From: Johnson, Ben <Ben.Johnson at vai.org> Date: Tuesday, May 11, 2021 at 8:02 AM To: Nitesh Turaga <nturaga.bioc at gmail.com>, bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: Re: BFG clean-up and reset for compartmap Hi Nitesh, It would be https://github.com/biobenkj/compartmap. Thanks! Best, Ben K Johnson Postdoctoral Fellow Department of Epigenetics Van Andel Institute 333 Bostwick Ave. NE Grand Rapids, MI 49503 From: Nitesh Turaga <nturaga.bioc at gmail.com> Date: Tuesday, May 11, 2021 at 2:01 PM To: Johnson, Ben <Ben.Johnson at vai.org>, bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [External] Re: BFG clean-up and reset for compartmap Hi, What exactly is the github repo we have to pull from? Nitesh From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Johnson, Ben <Ben.Johnson at vai.org> Date: Monday, May 10, 2021 at 3:11 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] BFG clean-up and reset for compartmap Hi all, We had a couple manifest files that were needing to be cleaned out to pass BiocCheck and were removed using the BFG. I?d like to request a reset/force pull upstream into the BioC devel git server repo (git at git.bioconductor.org:packages/compartmap<mailto:git at git.bioconductor.org:packages/compartmap>) to commit various bugfixes and API changes for compartmap. Thanks so much! Best, Ben K Johnson Postdoctoral Fellow Department of Epigenetics Van Andel Institute 333 Bostwick Ave. NE Grand Rapids, MI 49503 CAUTION: This email was sent from outside of the organization (nturaga.bioc at gmail.com). Do not click links or open attachments unless you recognize the sender and know the content is safe. If you have any questions, please contact ServiceDesk at vai.org<mailto:servicedesk at vai.org>.