Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas
[Bioc-devel] SVN to GIT
13 messages · Obenchain, Valerie, Servant Nicolas, Turaga, Nitesh
3 days later
Hi Nicolas, I understand you've been in contact with several people about this. Are you still having access problems? Valerie
On 03/06/2018 01:04 AM, Servant Nicolas wrote:
Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit?:
Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas [[alternative HTML version deleted]]
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http://bioconductor.org/developers/how-to/git/
On Mar 9, 2018, at 11:42 AM, Servant Nicolas <nicolas.servant at curie.fr> wrote: Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit :
Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas [[alternative HTML version deleted]]
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Thank you very much. The point is that I cannot checkout because I guess BioC does not know my SSH keys. >>git clone git at git.bioconductor.org:packages/HiTC Cloning into 'HiTC'... Permission denied (publickey). fatal: Could not read from remote repository. How can I fix this ? Thanks Le 09/03/2018 ? 17:43, Turaga, Nitesh a ?crit?:
On Mar 9, 2018, at 11:42 AM, Servant Nicolas <nicolas.servant at curie.fr> wrote: Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit :
Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas [[alternative HTML version deleted]]
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Nicolas, You need to follow instructions to submit an SSH key: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ Specifically, you need to fill out this form using n.servant as your username: https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform Valerie
On 03/09/2018 08:47 AM, Servant Nicolas wrote:
Thank you very much. The point is that I cannot checkout because I guess BioC does not know my SSH keys. >>git clone git at git.bioconductor.org:packages/HiTC<mailto:git at git.bioconductor.org:packages/HiTC> Cloning into 'HiTC'... Permission denied (publickey). fatal: Could not read from remote repository. How can I fix this ? Thanks Le 09/03/2018 ? 17:43, Turaga, Nitesh a ?crit : http://bioconductor.org/developers/how-to/git/
On Mar 9, 2018, at 11:42 AM, Servant Nicolas <nicolas.servant at curie.fr><mailto:nicolas.servant at curie.fr> wrote:
Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit : Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Thank you very much Valerie. I take care of that asap. N Le 09/03/2018 ? 18:11, Obenchain, Valerie a ?crit?:
Nicolas, You? need to follow instructions to submit an SSH key: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ Specifically, you need to fill out this form using n.servant as your username: https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform Valerie On 03/09/2018 08:47 AM, Servant Nicolas wrote:
Thank you very much. The point is that I cannot checkout because I guess BioC does not know my SSH keys.
>>git clonegit at git.bioconductor.org:packages/HiTC
Cloning into 'HiTC'... Permission denied (publickey). fatal: Could not read from remote repository. How can I fix this ? Thanks Le 09/03/2018 ? 17:43, Turaga, Nitesh a ?crit?:
On Mar 9, 2018, at 11:42 AM, Servant Nicolas<nicolas.servant at curie.fr> wrote: Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit :
Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas [[alternative HTML version deleted]]
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Keys are processed once a day around 9am EST. You will get an email indicating if your submission was successful or not. Valerie
On 03/09/2018 09:11 AM, Obenchain, Valerie wrote:
Nicolas, You need to follow instructions to submit an SSH key: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ Specifically, you need to fill out this form using n.servant as your username: https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform Valerie
On 03/09/2018 08:47 AM, Servant Nicolas wrote:
Thank you very much. The point is that I cannot checkout because I guess BioC does not know my SSH keys. >>git clone git at git.bioconductor.org:packages/HiTC<mailto:git at git.bioconductor.org:packages/HiTC> Cloning into 'HiTC'... Permission denied (publickey). fatal: Could not read from remote repository. How can I fix this ? Thanks Le 09/03/2018 ? 17:43, Turaga, Nitesh a ?crit : http://bioconductor.org/developers/how-to/git/
On Mar 9, 2018, at 11:42 AM, Servant Nicolas <nicolas.servant at curie.fr><mailto:nicolas.servant at curie.fr> wrote:
Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit : Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
3 days later
Dear Valerie, I submitted my ssh key but did not receive any confirmation mail that it has been done. And the git command still crashes. Anything else I can do ? Thank you Nicolas Le 09/03/2018 ? 18:15, Obenchain, Valerie a ?crit?:
Keys are processed once a day around 9am EST. You will get an email indicating if your submission was successful or not. Valerie On 03/09/2018 09:11 AM, Obenchain, Valerie wrote:
Nicolas, You? need to follow instructions to submit an SSH key: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ Specifically, you need to fill out this form using n.servant as your username: https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform Valerie On 03/09/2018 08:47 AM, Servant Nicolas wrote:
Thank you very much. The point is that I cannot checkout because I guess BioC does not know my SSH keys.
>>git clonegit at git.bioconductor.org:packages/HiTC
Cloning into 'HiTC'... Permission denied (publickey). fatal: Could not read from remote repository. How can I fix this ? Thanks Le 09/03/2018 ? 17:43, Turaga, Nitesh a ?crit?:
On Mar 9, 2018, at 11:42 AM, Servant Nicolas<nicolas.servant at curie.fr> wrote: Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit :
Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas [[alternative HTML version deleted]]
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Nitesh, Were the submitted keys invalid? Any idea why Nicolas didn't received an email? Val
On 03/13/2018 02:37 AM, Servant Nicolas wrote:
Dear Valerie, I submitted my ssh key but did not receive any confirmation mail that it has been done. And the git command still crashes. Anything else I can do ? Thank you Nicolas Le 09/03/2018 ? 18:15, Obenchain, Valerie a ?crit : Keys are processed once a day around 9am EST. You will get an email indicating if your submission was successful or not. Valerie
On 03/09/2018 09:11 AM, Obenchain, Valerie wrote:
Nicolas, You need to follow instructions to submit an SSH key: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ Specifically, you need to fill out this form using n.servant as your username: https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform Valerie
On 03/09/2018 08:47 AM, Servant Nicolas wrote:
Thank you very much. The point is that I cannot checkout because I guess BioC does not know my SSH keys. >>git clone git at git.bioconductor.org:packages/HiTC<mailto:git at git.bioconductor.org:packages/HiTC> Cloning into 'HiTC'... Permission denied (publickey). fatal: Could not read from remote repository. How can I fix this ? Thanks Le 09/03/2018 ? 17:43, Turaga, Nitesh a ?crit : http://bioconductor.org/developers/how-to/git/
On Mar 9, 2018, at 11:42 AM, Servant Nicolas <nicolas.servant at curie.fr><mailto:nicolas.servant at curie.fr> wrote:
Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit : Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Hi Val, Just checked Nicholas? key, but I think his key is bad (spaces). Either way, ssh-keygen -l -f <key> does not validate.
On Mar 13, 2018, at 8:48 AM, Obenchain, Valerie <Valerie.Obenchain at RoswellPark.org> wrote: Nitesh, Were the submitted keys invalid? Any idea why Nicolas didn't received an email? Val On 03/13/2018 02:37 AM, Servant Nicolas wrote:
Dear Valerie, I submitted my ssh key but did not receive any confirmation mail that it has been done. And the git command still crashes. Anything else I can do ? Thank you Nicolas Le 09/03/2018 ? 18:15, Obenchain, Valerie a ?crit :
Keys are processed once a day around 9am EST. You will get an email indicating if your submission was successful or not. Valerie On 03/09/2018 09:11 AM, Obenchain, Valerie wrote:
Nicolas, You need to follow instructions to submit an SSH key: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ Specifically, you need to fill out this form using n.servant as your username: https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform Valerie On 03/09/2018 08:47 AM, Servant Nicolas wrote:
Thank you very much. The point is that I cannot checkout because I guess BioC does not know my SSH keys.
>>git clone
git at git.bioconductor.org:packages/HiTC Cloning into 'HiTC'... Permission denied (publickey). fatal: Could not read from remote repository. How can I fix this ? Thanks Le 09/03/2018 ? 17:43, Turaga, Nitesh a ?crit :
On Mar 9, 2018, at 11:42 AM, Servant Nicolas <nicolas.servant at curie.fr> wrote: Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit :
Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas [[alternative HTML version deleted]]
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Thanks Nitesh. Nicolas, it looks like you're having problems generating a valid key. There are a couple of options. 1) Generate a key with ssh-keygen. Check the validity of the key with ssh-keygen -lf. Do not submit the key to the google form unless the output indicates it's a valid key. 2) Upload your key to your nservant github account. The upload won't succeed unless you have a valid key so this will serve as a good check. Once the key is in github.com/nservant.keys register with the google form. User n.servant as your ID but instead of supplying an SSH key supply your github username. We'll get the key automatically from there. Instructions for adding a SSH key to github: https://help.github.com/articles/adding-a-new-ssh-key-to-your-github-account/ Valerie
On 03/13/2018 06:58 AM, Turaga, Nitesh wrote:
Hi Val,
Just checked Nicholas? key, but I think his key is bad (spaces). Either way,
ssh-keygen -l -f <key>
does not validate.
On Mar 13, 2018, at 8:48 AM, Obenchain, Valerie <Valerie.Obenchain at RoswellPark.org><mailto:Valerie.Obenchain at RoswellPark.org> wrote:
Nitesh, Were the submitted keys invalid? Any idea why Nicolas didn't received an email? Val
On 03/13/2018 02:37 AM, Servant Nicolas wrote:
Dear Valerie, I submitted my ssh key but did not receive any confirmation mail that it has been done. And the git command still crashes. Anything else I can do ? Thank you Nicolas Le 09/03/2018 ? 18:15, Obenchain, Valerie a ?crit : Keys are processed once a day around 9am EST. You will get an email indicating if your submission was successful or not. Valerie
On 03/09/2018 09:11 AM, Obenchain, Valerie wrote:
Nicolas, You need to follow instructions to submit an SSH key: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ Specifically, you need to fill out this form using n.servant as your username: https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform Valerie
On 03/09/2018 08:47 AM, Servant Nicolas wrote:
Thank you very much. The point is that I cannot checkout because I guess BioC does not know my SSH keys. >>git clone git at git.bioconductor.org:packages/HiTC<mailto:git at git.bioconductor.org:packages/HiTC> Cloning into 'HiTC'... Permission denied (publickey). fatal: Could not read from remote repository. How can I fix this ? Thanks Le 09/03/2018 ? 17:43, Turaga, Nitesh a ?crit : http://bioconductor.org/developers/how-to/git/ On Mar 9, 2018, at 11:42 AM, Servant Nicolas <nicolas.servant at curie.fr><mailto:nicolas.servant at curie.fr> wrote: Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit : Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
1 day later
ok, so I just resubmitted my ssh key on the form. Could you please check if it works better now. Thank you Nicolas Le 13/03/2018 ? 13:48, Obenchain, Valerie a ?crit?:
Nitesh, Were the submitted keys invalid? Any idea why Nicolas didn't received an email? Val On 03/13/2018 02:37 AM, Servant Nicolas wrote:
Dear Valerie, I submitted my ssh key but did not receive any confirmation mail that it has been done. And the git command still crashes. Anything else I can do ? Thank you Nicolas Le 09/03/2018 ? 18:15, Obenchain, Valerie a ?crit?:
Keys are processed once a day around 9am EST. You will get an email indicating if your submission was successful or not. Valerie On 03/09/2018 09:11 AM, Obenchain, Valerie wrote:
Nicolas, You? need to follow instructions to submit an SSH key: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ Specifically, you need to fill out this form using n.servant as your username: https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform Valerie On 03/09/2018 08:47 AM, Servant Nicolas wrote:
Thank you very much. The point is that I cannot checkout because I guess BioC does not know my SSH keys.
>>git clonegit at git.bioconductor.org:packages/HiTC
Cloning into 'HiTC'... Permission denied (publickey). fatal: Could not read from remote repository. How can I fix this ? Thanks Le 09/03/2018 ? 17:43, Turaga, Nitesh a ?crit?:
On Mar 9, 2018, at 11:42 AM, Servant Nicolas<nicolas.servant at curie.fr> wrote: Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 ? 10:04, Servant Nicolas a ?crit :
Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be established. ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I also did something with my ssh key from here https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform but nothing happen. Could you help me fixing this point ? Many thanks. Best Nicolas [[alternative HTML version deleted]]
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This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.