Hi to all, I?m maintainer of the package ?cbaf?. I have pushed changes to both devel and stable branches almost two days ago. The package check has only been carried out for the stable release so far. There has been only one error on macOS server as a result of the version of Java used on the server. Despite this, the older version is listed on the cbaf web page for BioC 3.11. https://bioconductor.org/packages/release/bioc/html/cbaf.html Am I missing something? Best regards, Arman
[Bioc-devel] The new version of the package 'cbaf' is not downloadable for BioC 3.11
4 messages · Arman Shahrisa, Shepherd, Lori, Hervé Pagès +1 more
We have encountered some problems with the build report since last Friday as reported here https://stat.ethz.ch/pipermail/bioc-devel/2020-May/016766.html It is possibly related to that. We are hopeful we have resolved the builder issues and once it returns to a normal state we are hopeful this will resolve on its own. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Arman Shahrisa <shahrisa.arman at hotmail.com>
Sent: Thursday, May 7, 2020 11:57 AM
To: bioc-devel <bioc-devel at r-project.org>
Subject: [Bioc-devel] The new version of the package 'cbaf' is not downloadable for BioC 3.11
Sent: Thursday, May 7, 2020 11:57 AM
To: bioc-devel <bioc-devel at r-project.org>
Subject: [Bioc-devel] The new version of the package 'cbaf' is not downloadable for BioC 3.11
Hi to all, I?m maintainer of the package ?cbaf?. I have pushed changes to both devel and stable branches almost two days ago. The package check has only been carried out for the stable release so far. There has been only one error on macOS server as a result of the version of Java used on the server. Despite this, the older version is listed on the cbaf web page for BioC 3.11. https://secure-web.cisco.com/1AcNMU_2RNz5_Rl5kl5xdhVk-0dJ3GrNdCoaa0t9UvVAwqP1jwApZvMJU39pBinP7RLEwOVIXgEJ0fksXR71QrWGvgNIRShgiAr8vEMy_-cFP5OT9HuE64Zo9VVb_yGj25LBrvlDkKsiKMGRGFjNg-xR5Enmjh2beUBIjAw5VRKDQOMkeJSFugsX35HqpQbP8JIBsQS6A0XAR4WjRNaJ98S222iajXeLA7oZ09CWR1YkSr3NHHzC-iWlgjUjjl9n9BIu2Yfj20eEXTvf-KqUsT8Fuypye82cyupnJYXv6FcFJDdzHurdvlA6xy0JV7RGmcqIqmXdsKoCl8T7sKorSiVvncBM80T2JrBe2gJFvsso/https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2Fcbaf.html Am I missing something? Best regards, Arman [[alternative HTML version deleted]] This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
5 days later
Hi Arman,
On 5/7/20 08:57, Arman Shahrisa wrote:
Hi to all, I?m maintainer of the package ?cbaf?. I have pushed changes to both devel and stable branches almost two days ago. The package check has only been carried out for the stable release so far. There has been only one error on macOS server as a result of the version of Java used on the server.
Not sure what is wrong with the version of Java used on our Mac server
machv2. cbaf fails to load with the following error message:
Error: .onLoad failed in loadNamespace() for 'xlsx', details:
call: fun(libname, pkgname)
error: Your java version is 14. Need 1.5.0 or higher.
Execution halted
ERROR: lazy loading failed for package ?cbaf?
Obviously version 14 is higher than version 1.5.0 so to me it just looks
like the Java checking code in xlsx is broken. Something you might want
to report to the xlsx maintainer.
Alternatively you might want to choose the packages you depend on more
carefully.
Cheers,
H.
Despite this, the older version is listed on the cbaf web page for BioC 3.11. https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_release_bioc_html_cbaf.html&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=A59d3JuLgSK3niLkKLga7vyA-vcQsy8q7riknf75RJ0&s=UAhMnh0UmS_h5m4zNRZ_6GE4yemBR0PNGc1WWIARybI&e= Am I missing something? Best regards, Arman [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=A59d3JuLgSK3niLkKLga7vyA-vcQsy8q7riknf75RJ0&s=A-xLxbM3GGrLmBYZzTnC17RTyvyKEL4QRFNK8DoDq8A&e=
Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319
Hi, The maintainer is already aware of this error. I reported it several months ago https://github.com/colearendt/xlsx/issues/132 and is reported multiple times (issues 154, 156, 159) There is a fix on the github version of the package but the maintainter hasn't updated the CRAN version yet. Maybe if you present your case xlsx will be finally updated on CRAN. Cheers, Llu?s
On Tue, 12 May 2020 at 23:44, Herv? Pag?s <hpages at fredhutch.org> wrote:
Hi Arman, On 5/7/20 08:57, Arman Shahrisa wrote:
Hi to all, I?m maintainer of the package ?cbaf?. I have pushed changes to both
devel and stable branches almost two days ago. The package check has only
been carried out for the stable release so far. There has been only one
error on macOS server as a result of the version of Java used on the server.
Not sure what is wrong with the version of Java used on our Mac server
machv2. cbaf fails to load with the following error message:
Error: .onLoad failed in loadNamespace() for 'xlsx', details:
call: fun(libname, pkgname)
error: Your java version is 14. Need 1.5.0 or higher.
Execution halted
ERROR: lazy loading failed for package ?cbaf?
Obviously version 14 is higher than version 1.5.0 so to me it just looks
like the Java checking code in xlsx is broken. Something you might want
to report to the xlsx maintainer.
Alternatively you might want to choose the packages you depend on more
carefully.
Cheers,
H.
Despite this, the older version is listed on the cbaf web page for BioC
3.11.
https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_release_bioc_html_cbaf.html&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=A59d3JuLgSK3niLkKLga7vyA-vcQsy8q7riknf75RJ0&s=UAhMnh0UmS_h5m4zNRZ_6GE4yemBR0PNGc1WWIARybI&e=
Am I missing something?
Best regards,
Arman
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=A59d3JuLgSK3niLkKLga7vyA-vcQsy8q7riknf75RJ0&s=A-xLxbM3GGrLmBYZzTnC17RTyvyKEL4QRFNK8DoDq8A&e=
-- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel