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[Bioc-devel] epivizr: Chromosom region always set to default
3 messages · Hector Corrada Bravo, Julian Gehring
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1 day later
Hi Hector, Looks all fine now, thanks for the fast fix! Best wishes Julian
On 04.06.2014 12:37, Hector Corrada Bravo wrote:
Hi Julian, There was a bug after an update on the epiviz web app. A fix is now available on both devel and release github repos: https://github.com/epiviz/epivizr [2] https://github.com/epiviz/epivizr-release [3] Also available on svn and will be available on next build. Thanks! Hector PS. Let me know how things go! On Wed, Jun 4, 2014 at 2:41 PM, Julian Gehring <julian.gehring at embl.de> wrote:
Hi, When I try to start epivizr with a defined region of interest, the region is always mapped to the default chromosome 11. library(epivizr) mz = startEpiviz(chr = "chr2", start = 1e5, end = 2e5) yields the URL
http://epiviz.cbcb.umd.edu/index.php?websocket-host[]=ws://localhost:7312&debug=false&chr=chr2&start=100000&end=200000&settings=default&ws=Y8kWxCO2Ajn&seqName=chr11&
[1] and a view that is centered around chr11:100000-200000.? It seems that the defaults overwrite the chromosome location, both in the latest version of 'epivizr' of bioc-release and bioc-devel.? Am I missing an important option to overwrite the default properly? Best wishes Julian
Links: ------ [1] http://epiviz.cbcb.umd.edu/index.php?websocket-host[]=ws://localhost:7312&debug=false&chr=chr2&start=100000&end=200000&settings=default&ws=Y8kWxCO2Ajn&seqName=chr11& [2] https://github.com/epiviz/epivizr [3] https://github.com/epiviz/epivizr-release