Skip to content

[Bioc-devel] Failing to get updated version of the package on Bioconductor

3 messages · Hamed Haseli, Shepherd, Lori, Martin Morgan

Original
Hamed Haseli
# 
Dear All,

I have always problems with updating the R package on Bioconductor and
installing the updated version of the package fro the repository.

The workflow that I follow is like:

   1. Make changes into the source code
   2. Increase the subversion x.y.z to x.y.(z+1)
   3. Push the changes to the repository
   4. Waiting for a day or more for the package to be compiled by
   Bioconductor

Doing the workflow above, I do not see the changes when I install the
package from Bioconductor. Please can you help?


Regards,
Hamed.


Hamed Haseli.M



----------------------------------------------------------------------------
| Hamed Haseli.M, PhD (Statistics)
| Data Scientist, Mouse Informatics
| E: hamedhm at ebi.ac.uk
| P:  +44(0) 1223 494 451
| M: +44(0) 7902 824 097
| W: hamedhaseli.webs.com
| European Bioinformatics Institute,
| Wellcome Trust Genome Campus, Hinxton, Cambridge, UK. CB10 1SD

-------------------------------------------------------------------------------
Shepherd, Lori
# 
We will need more information in order to help you properly.


Could you please inform us of the package that you are referring to?


When you push make sure you are pushing to the git.bioconductor.org. This involves your remotes to be properly set up and that you are pushing to the right location.


Please also show the results of


git remote -v


and the actual git push command you use.


Thank you.



Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263
Martin Morgan
# 
also remember that you are making changes to the _devel_ version of Bioconductor, so must look for changes in the devel branch of the repository; 

  http://bioconductor.org/developers/how-to/useDevel/

Martin

?On 7/15/19, 9:28 AM, "Bioc-devel on behalf of Shepherd, Lori" <bioc-devel-bounces at r-project.org on behalf of Lori.Shepherd at RoswellPark.org> wrote:

    We will need more information in order to help you properly.
    
    
    Could you please inform us of the package that you are referring to?
    
    
    When you push make sure you are pushing to the git.bioconductor.org. This involves your remotes to be properly set up and that you are pushing to the right location.
    
    
    Please also show the results of
    
    
    git remote -v
    
    
    and the actual git push command you use.
    
    
    Thank you.
    
    
    
    Lori Shepherd
    
    Bioconductor Core Team
    
    Roswell Park Cancer Institute
    
    Department of Biostatistics & Bioinformatics
    
    Elm & Carlton Streets
    
    Buffalo, New York 14263