Dear Bioc core team, We would like to deprecate CuratedAtlasQuery as cellNexus (in review) is coming on board. Thanks a lot. Best wishes. Stefano_________________ _________________ Dr Stefano Mangiola Group Leader, Computational Cancer Immunogenomics SAiGENCI ? South Australian immunoGENomics Cancer Institute THE UNIVERSITY OF ADELAIDE Level 9 | AHMS Building | North Terrace | Adelaide T: +61 8 8313 4024<tel:+61883134024> | M: +61 466 452 544<tel:+61466452544> | E: stefano.mangiola at adelaide.edu.au<mailto:stefano.mangiola at adelaide.edu.au> W: www.adelaide.edu.au/saigenci<http://www.adelaide.edu.au/saigenci> CRICOS Provider Number 00123M
[Bioc-devel] Deprecating CuratedAtlasQuery as cellNexus is coming on board
2 messages · stefano iacus, Shepherd, Lori
4 days later
Thank you for letting us know. We will begin the deprecation process. Lori Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefano Mangiola <stefano.mangiola at adelaide.edu.au>
Sent: Sunday, February 1, 2026 8:25 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Cc: Mengyuan Shen <shen.m at wehi.edu.au>; Michael Milton <milton.m at wehi.edu.au>
Subject: [Bioc-devel] Deprecating CuratedAtlasQuery as cellNexus is coming on board
Sent: Sunday, February 1, 2026 8:25 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Cc: Mengyuan Shen <shen.m at wehi.edu.au>; Michael Milton <milton.m at wehi.edu.au>
Subject: [Bioc-devel] Deprecating CuratedAtlasQuery as cellNexus is coming on board
Dear Bioc core team, We would like to deprecate CuratedAtlasQuery as cellNexus (in review) is coming on board. Thanks a lot. Best wishes. Stefano_________________ _________________ Dr Stefano Mangiola Group Leader, Computational Cancer Immunogenomics SAiGENCI ? South Australian immunoGENomics Cancer Institute THE UNIVERSITY OF ADELAIDE Level 9 | AHMS Building | North Terrace | Adelaide T: +61 8 8313 4024<tel:+61883134024> | M: +61 466 452 544<tel:+61466452544> | E: stefano.mangiola at adelaide.edu.au<mailto:stefano.mangiola at adelaide.edu.au> W: http://secure-web.cisco.com/1LxO5zE8RKRC3kstIoqBMNi8D_0-3_a1Rqt9FA0GeVQR3I3vwL0IBOgUvY__eM0ytb5jYzgwvTxEreh5tFIShW2o671OKCRQqfgYC-ZET6y9cyIuiKrmqjAhKkSyPzCm3gUA69YRoufPYOoFHJ-HNJI13fQBx2wqWn7Q_ABwRZBu1xCbgFfbhuI_n07xTpWCjhv6pvgFl8f_nac_6eCYojtX62X2mYU5QwAy2Z30vMvPUmGAN_M4atZkEitAZvzZtZUY2XrE6mkHTYZiHhuraJCPsrpTD-Ol6epFJ-7GDKt0NiCkcHgXL3Yzm-m-BQpTm/http%3A%2F%2Fwww.adelaide.edu.au%2Fsaigenci<http://secure-web.cisco.com/1LxO5zE8RKRC3kstIoqBMNi8D_0-3_a1Rqt9FA0GeVQR3I3vwL0IBOgUvY__eM0ytb5jYzgwvTxEreh5tFIShW2o671OKCRQqfgYC-ZET6y9cyIuiKrmqjAhKkSyPzCm3gUA69YRoufPYOoFHJ-HNJI13fQBx2wqWn7Q_ABwRZBu1xCbgFfbhuI_n07xTpWCjhv6pvgFl8f_nac_6eCYojtX62X2mYU5QwAy2Z30vMvPUmGAN_M4atZkEitAZvzZtZUY2XrE6mkHTYZiHhuraJCPsrpTD-Ol6epFJ-7GDKt0NiCkcHgXL3Yzm-m-BQpTm/http%3A%2F%2Fwww.adelaide.edu.au%2Fsaigenci> CRICOS Provider Number 00123M [[alternative HTML version deleted]] This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.