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[Bioc-devel] SSH Issues

4 messages · Chris Eeles, Nitesh Turaga

Original
Nitesh Turaga
# 
Hi Chris,

I just checked and it seems you have changed the username in Benjamin?s account. Is that correct? 

So, the mapping is lost for all the packages Benjamin had, and your username as well has lost all of it?s mapping on Git repo. 

Can you tell me what packages you need access to? We should keep Benjamin?s account at his ?utoronto.ca? separate from yours. 

I?ll create an account for you and give you access. I?ll have to fix benjamin?s account and yours as well/

Best,

Nitesh

  
  


  


    

    

      
      

        


  

        

      Chris Eeles
    

    

      
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Hi Nitesh,

I did not change the username on purpose, maybe it happened because I submitted CoreGx under my GitHub account with Benjamin listed as the maintainer?

Anyway, all of our package on Bioconductor are:

  *   genefu
  *   PharmacoGx
  *   predictionnet
  *   survcomp
  *   Xeva
  *   consensusOV
  *   CoreGx

Benjamin?s GitHub username is bhaibeka, if I just change the username back will that work?

Sorry for an inconvenience.

Best,
Chris

From: Nitesh Turaga <nturaga.bioc at gmail.com>
Sent: June 3, 2020 1:15 PM
To: Chris Eeles <christopher.eeles at outlook.com>
Cc: bioc-devel at r-project.org; Haibe-Kains, Benjamin <Benjamin.Haibe-Kains at uhnresearch.ca>
Subject: Re: [Bioc-devel] SSH Issues

Hi Chris,

I just checked and it seems you have changed the username in Benjamin?s account. Is that correct?

So, the mapping is lost for all the packages Benjamin had, and your username as well has lost all of it?s mapping on Git repo.

Can you tell me what packages you need access to? We should keep Benjamin?s account at his ?utoronto.ca<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Futoronto.ca%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222071484&sdata=oy5bAg2L8ZyLGTYEhLoVRV0iH8Oto3iCnTtsdVEEZR4%3D&reserved=0>? separate from yours.

I?ll create an account for you and give you access. I?ll have to fix benjamin?s account and yours as well/

Best,

Nitesh

        
On Jun 3, 2020, at 12:56 PM, Chris Eeles <christopher.eeles at outlook.com<mailto:christopher.eeles at outlook.com>> wrote:

        
Hi Nitesh,

I had a look at the packages I have access to and it seems that the Bioconductor credentials account I logged into only has access to the Xeva repo. I am using ?benjamin.haibe.kains at utoronto.ca<mailto:benjamin.haibe.kains at utoronto.ca>', the email listed as maintainer for all of the BHKLAB Bioconductor submissions.


Which email would the credentials be managed if not the maintainers??

I tried activating an account using my GitHub email but it says I am not the maintainer of any packages.

Are you able to see which email the credentials for PharmacoGx and CoreGx are managed under? If not how can I manage access to these repos?

Thanks for your support.

Best,
Chris

From: Nitesh Turaga <nturaga.bioc at gmail.com<mailto:nturaga.bioc at gmail.com>>
Sent: June 3, 2020 11:05 AM
To: Chris Eeles <christopher.eeles at outlook.com<mailto:christopher.eeles at outlook.com>>
Cc: Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] SSH Issues

Hi Chris,

http://bioconductor.org/developers/how-to/git/faq/<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Ffaq%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222071484&sdata=A7Zxee0BmsukYqKMoaueyryPUre%2F4j6yqZW4ermkaNo%3D&reserved=0> Take a look at #13 and #14.

I?ll be able to better help you with more information.

Best,

Nitesh

        
On Jun 3, 2020, at 10:49 AM, Chris Eeles <christopher.eeles at outlook.com<mailto:christopher.eeles at outlook.com>> wrote:

        
Hello Bioconductor team,

I am having issues pushing updates to the development branch of the CoreGx package.

When I try to push to upstream I get:
"FATAL: W any packages/CoreGx gangeshberiuhn DENIED by fallthru
(or you mis-spelled the reponame)
Fatal: Could not read from remote repository.

Please make sure you have the correct access rights
on the repository and the repository exists."

I have access to our Bioconductor credentials account and have confirmed that my public key is registered there, so I am not sure what is going on. I also tried removing and re-adding upstream.

Any help would be appreciated.

Best,
---
Christopher Eeles
Software Developer
BHK Laboratory<http://www.bhklab.ca/<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.bhklab.ca%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222081479&sdata=JFmkXRxuxJJG1FE%2F0N8Gxq96ocipbuhF1gg0vTw42ic%3D&reserved=0>>
Princess Margaret Cancer Centre<https://www.pmgenomics.ca/pmgenomics/<https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.pmgenomics.ca%2Fpmgenomics%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222081479&sdata=LnvKW%2Bl38rc88zsHldvPPPnkDmqOLvlp9fAiG0PWRRQ%3D&reserved=0>>
University Health Network<http://www.uhn.ca/<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.uhn.ca%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222081479&sdata=08gO6fz73rMPzceX0dlITunPHbeZnz8LsTzyQKCVToc%3D&reserved=0>>





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      Nitesh Turaga
    

    

      
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Hi Chris,

Thanks for that list. I?ll give you and Benjamin access all those packages. That is what you need right? 

I?ll contact you when it?s done. Don?t do anything from your end just yet.

Best,

Nitesh

            

      
      
      
    

        

      
      
    

        

  
  


  


      

    

    

      
      

        


  

        

      Nitesh Turaga
    

    

      
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Hi Chris and Benjamin,

I?m trying to set things in order so that access is resumed back to normal for the 7 packages

It seems that there are multiple email address listed for Benjamin --  ?benjamin.haibe.kains at utoronto.ca? and 'bhklab.research at gmail.com?.  Can we default to only one email address? 'benjamin.haibe.kains at utoronto.ca? is registered as maintainer on the packages, so choosing this email as the default would be easiest for me to fix. But I?ll leave the choice to you.

And I?ve created a new BiocCredentials account for Chris, so that there is no crossover of accounts. I?ll share these credentials with Chris in a private email. 

Both Chris and Benjamin will have maintainer access to the packages in question. 

Best,

Nitesh