Hi, I am the maintainer of the R package MultiRNAflow. I recently pushed an update of my package. My package passed the install and build check realized by the computers - *nebbiolo2* [Linux (Ubuntu 24.04.3 LTS) / x86_64] - *lconway* [macOS 12.7.6 Monterey / x86_64] My package pass the install check for *kjohnson3* [macOS 13.7.7 Ventura / arm64] and *taishan* [Linux (openEuler 24.03 LTS) / aarch64] but the build check alternates between 'OK' and 'ERROR' for the last 7-8 days for *kjohnson3*. The error message is *Running 'texi2dvi' on 'MultiRNAflow_vignette-knitr.tex' failed.Messages:/opt/R/arm64/bin/texi2dvi: biber failed* It seems *kjohnson3* and *taishan *struggle with bibliography when pdf is created. Why my package pass successfully *nebbiolo2* and *lconway* check but alternates between 'OK' and 'ERROR' for *kjohnson3* ? Sincerely yours, Rodolphe Loubaton
[Bioc-devel] kjohnson3 alternates between OK and 'Error' for build check
3 messages · Rodolphe Loubaton, Andres Wokaty
5 days later
Hi Rodolphe, I'm not sure why there is some fluxuation. I see that it is currently passing on kjohnson3. I've tagged taishan's maintainer on the #arm-linux channel of our Zulip, which you are welcome to follow at https://community-bioc.zulipchat.com/#narrow/channel/507633-arm-linux/topic//with/545824051. Andres Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Rodolphe Loubaton <loubaton.rodolphe at gmail.com>
Sent: Sunday, October 19, 2025 11:29 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] kjohnson3 alternates between OK and 'Error' for build check
Sent: Sunday, October 19, 2025 11:29 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] kjohnson3 alternates between OK and 'Error' for build check
* This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. *
Hi,
I am the maintainer of the R package MultiRNAflow.
I recently pushed an update of my package.
My package passed the install and build check realized by the computers
- *nebbiolo2* [Linux (Ubuntu 24.04.3 LTS) / x86_64]
- *lconway* [macOS 12.7.6 Monterey / x86_64]
My package pass the install check for *kjohnson3* [macOS 13.7.7 Ventura /
arm64] and *taishan* [Linux (openEuler 24.03 LTS) / aarch64] but the build
check alternates between 'OK' and 'ERROR' for the last 7-8 days for
*kjohnson3*.
The error message is
*Running 'texi2dvi' on 'MultiRNAflow_vignette-knitr.tex'
failed.Messages:/opt/R/arm64/bin/texi2dvi: biber failed*
It seems *kjohnson3* and *taishan *struggle with bibliography when pdf is
created.
Why my package pass successfully *nebbiolo2* and *lconway* check but
alternates between 'OK' and 'ERROR' for *kjohnson3* ?
Sincerely yours,
Rodolphe Loubaton
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Hi Andres, Thank you for your answer. When I realized the first push on the 10th of October (1.7.1), I think the problem for kjohnson3 and taishan was how I called the bibliography in my .Rnw vignette (even if I still don't know why it was a problem only on kjohnson3 and taishan). So I changed the method, which is the same used by the Bioconductor package BiocStyle. The new push realized on the 20th of October (1.7.2) seems to work because kjohnson3 does not alternate between 'OK' and 'ERROR' anymore. I do not know yet if this new method works on taishan because "build" is still fixed on (1.7.1) unlike "install". But I suppose I will have the answer tonight or tomorrow. I just hope my package will not be considered deprecated. Sincerely yours, Rodolphe Le ven. 24 oct. 2025 ? 22:45, Andres Wokaty <Andres.Wokaty at sph.cuny.edu> a ?crit :
Hi Rodolphe, I'm not sure why there is some fluxuation. I see that it is currently passing on kjohnson3. I've tagged taishan's maintainer on the #arm-linux channel of our Zulip, which you are welcome to follow at https://community-bioc.zulipchat.com/#narrow/channel/507633-arm-linux/topic//with/545824051 . Andres Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Rodolphe Loubaton <loubaton.rodolphe at gmail.com> *Sent:* Sunday, October 19, 2025 11:29 AM *To:* bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* [Bioc-devel] kjohnson3 alternates between OK and 'Error' for build check * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * Hi, I am the maintainer of the R package MultiRNAflow. I recently pushed an update of my package. My package passed the install and build check realized by the computers - *nebbiolo2* [Linux (Ubuntu 24.04.3 LTS) / x86_64] - *lconway* [macOS 12.7.6 Monterey / x86_64] My package pass the install check for *kjohnson3* [macOS 13.7.7 Ventura / arm64] and *taishan* [Linux (openEuler 24.03 LTS) / aarch64] but the build check alternates between 'OK' and 'ERROR' for the last 7-8 days for *kjohnson3*. The error message is *Running 'texi2dvi' on 'MultiRNAflow_vignette-knitr.tex' failed.Messages:/opt/R/arm64/bin/texi2dvi: biber failed* It seems *kjohnson3* and *taishan *struggle with bibliography when pdf is created. Why my package pass successfully *nebbiolo2* and *lconway* check but alternates between 'OK' and 'ERROR' for *kjohnson3* ? Sincerely yours, Rodolphe Loubaton [[alternative HTML version deleted]]
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