Hi Shraddha,
Hundreds of Bioconductor packages are affected since yesterday. Please
ignore.
Today we've upgraded R to R 4.1 alpha on machv2, and made a tweak to the
setup, so hopefully these errors will be gone on tomorrow's report.
Best,
H.
On 4/30/21 2:46 PM, Shraddha Pai wrote:
Hello BioC community,
My package netDx is building correctly on Linux but has the following
issues on Mac:
When running the vignette BuildPredictor.Rmd,
1) we get the error: Warning in doTryCatch(return(expr), name, parentenv,
handler) :
no font could be found for family "Arial"
2) the vignette then ends with the error:
Error: processing vignette 'BuildPredictor.Rmd' failed with diagnostics:
polygon edge not found
Why would the package have this error on Macs and not on Linux machines?
And the error had not previously occurred. It seems to have occurred with
an old vignette (not the one I recently added).
One thing I had to change recently was to change the vignette building
method for all vignettes, from knitr::knitr to knitr::rmarkdown, but I
did it because I was getting a never-before-seen vignette building
error for which I found this solution. Was this change a mistake?
Any thoughts would be appreciated.
Thanks,
Shraddha
--
*Shraddha Pai, PhD*
Independent Investigator
shraddhapai.com; @spaiglass on Twitter
*Ontario Institute for Cancer Research*
MaRS Centre, 661 University Avenue, Suite 510, Toronto, Ontario, Canada