[Bioc-devel] write access to RTNduals and RTNsurvival

Hi Mauro

Please always forward your git questions to bioc-devel. There is more than
one person handling the issues about git.

RTNsurvival, ? Clari Groeneveld is the maintainer hence you don?t have
write access.

RTNduals ? Vinicius Chagas is the listed maintainer on our system.

This issue is because our SVN system also had only Clari and Vinicius as
primary maintainers. I am adding them in my reply as well, and I?m guessing
they are both fine with me adding you to our system for these packages?

Best,

Nitesh

On Oct 2, 2017, at 9:29 AM, Nitesh <nitesh.turaga at gmail.com> wrote:



---------- Forwarded message ---------
From: m castro <mauro.a.castro at gmail.com>
Date: Mon, 2 Oct 2017 at 09:13
Subject: Re: write access to RTNduals and RTNsurvival
To: Obenchain, Valerie <Valerie.Obenchain at roswellpark.org>
Cc: Clarice Groeneveld <clari.groeneveld at gmail.com>, Vinicius Saraiva

Chagas <chagas.vis at gmail.com>, Nitesh <nitesh.turaga at gmail.com>

Hi Valerie,

I just thought the subject would not be of interest to a large list of
bioc developers. But yes, thank you very much for forwarding to
Nitesh.

Regards,

Mauro


On 2 October 2017 at 09:36, Obenchain, Valerie
<Valerie.Obenchain at roswellpark.org> wrote:

Hi Maruo,

Was there a  particular reason you didn't write to

bioc-devel at r-project.org?

That's where all svn ->git transition questions are being answered and

it's

much easier to manage than forwarding personal emails.

Nitesh and Martin have been handling the svn -> git transition and

I've cc'd

Nitesh on this message. @Nitesh, can you please help Mauro?

Thanks.
Val



On 09/29/2017 04:02 PM, m castro wrote:

Dear Valerie,

I am sorry for writing this email directly to you (not via
r-project.org mailing list).

It is related to write access to two packages of my group (RTNduals
and RTNsurvival). I am one of the active maintainers of these
packages, but it seems I no-longer have write access via git. Given
that I've successfully concluded the migration process (from svn to
git) for other packages (e.g. RTN, RedeR and geneplast), then I
decided I should contact you for this help.

Here is my GitHub ID and contact information at the packages' homepage.

# GitHub id: castromaa
# Bioc maintainer contact: Mauro A. A. Castro <mauro.a.castro at

gmail.com>

For reference, please see below the message when I try to push

RTNduals via

git:

$ git push origin master
FATAL: W any packages/RTNduals m.castro DENIED by fallthru (or you
mis-spelled the reponame)
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.

If possible, there is another member of my group that is facing the
same problem (Clarice Groeneveld). She is also an active maintainer of
RTNduals (as indicated at the package's homepage):

# GitHub id: csgroen
# Bioc maintainer contact: Clarice Groeneveld <clari.groeneveld at
gmail.com>

Please let me know if I need to provide any additional information

<https://maps.google.com/?q=%3E+Please+let+me+know+if+I+need+to+provide+any+additional+information&entry=gmail&source=g>
.

Best,

Mauro

---

Prof. Mauro Castro, MD, PhD
Bioinformatics & Systems Biology Lab
Polytechnic Center
Federal University of Parana - UFPR
Rua Alcides Vieira Arcoverde, 1225
Curitiba - PR 81520-260 - Brazil

e-mail: mauro.castro at ufpr.br / mauro.a.castro at gmail.com
phone: +55-41-33614906 <+55%2041%203361-4906>
skype: mauro.a.castro
http://lattes.cnpq.br/6484877487662355



This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee

or

agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.

--
Nitesh Turaga

This email message may contain legally privileged and/or confidential
information.  If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited.  If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.

Hello Nitesh,

Thank you very much for the support. I totally agree with that.

Best,
Vinicius

On Mon, Oct 2, 2017 at 10:44 AM Turaga, Nitesh
<Nitesh.Turaga at roswellpark.org> wrote:

Hi Mauro

Please always forward your git questions to bioc-devel. There is more than
one person handling the issues about git.

RTNsurvival, ? Clari Groeneveld is the maintainer hence you don?t have
write access.

RTNduals ? Vinicius Chagas is the listed maintainer on our system.

This issue is because our SVN system also had only Clari and Vinicius as
primary maintainers. I am adding them in my reply as well, and I?m guessing
they are both fine with me adding you to our system for these packages?

Best,

Nitesh

On Oct 2, 2017, at 9:29 AM, Nitesh <nitesh.turaga at gmail.com> wrote:



---------- Forwarded message ---------
From: m castro <mauro.a.castro at gmail.com>
Date: Mon, 2 Oct 2017 at 09:13
Subject: Re: write access to RTNduals and RTNsurvival
To: Obenchain, Valerie <Valerie.Obenchain at roswellpark.org>
Cc: Clarice Groeneveld <clari.groeneveld at gmail.com>, Vinicius Saraiva
Chagas <chagas.vis at gmail.com>, Nitesh <nitesh.turaga at gmail.com>


Hi Valerie,

I just thought the subject would not be of interest to a large list of
bioc developers. But yes, thank you very much for forwarding to
Nitesh.

Regards,

Mauro


On 2 October 2017 at 09:36, Obenchain, Valerie
<Valerie.Obenchain at roswellpark.org> wrote:

Hi Maruo,

Was there a  particular reason you didn't write to
bioc-devel at r-project.org?
That's where all svn ->git transition questions are being answered and
it's
much easier to manage than forwarding personal emails.

Nitesh and Martin have been handling the svn -> git transition and
I've cc'd
Nitesh on this message. @Nitesh, can you please help Mauro?

Thanks.
Val



On 09/29/2017 04:02 PM, m castro wrote:

Dear Valerie,

I am sorry for writing this email directly to you (not via
r-project.org mailing list).

It is related to write access to two packages of my group (RTNduals
and RTNsurvival). I am one of the active maintainers of these
packages, but it seems I no-longer have write access via git. Given
that I've successfully concluded the migration process (from svn to
git) for other packages (e.g. RTN, RedeR and geneplast), then I
decided I should contact you for this help.

Here is my GitHub ID and contact information at the packages'
homepage.

# GitHub id: castromaa
# Bioc maintainer contact: Mauro A. A. Castro <mauro.a.castro at
gmail.com>

For reference, please see below the message when I try to push
RTNduals via
git:

$ git push origin master
FATAL: W any packages/RTNduals m.castro DENIED by fallthru (or you
mis-spelled the reponame)
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.

If possible, there is another member of my group that is facing the
same problem (Clarice Groeneveld). She is also an active maintainer of
RTNduals (as indicated at the package's homepage):

# GitHub id: csgroen
# Bioc maintainer contact: Clarice Groeneveld <clari.groeneveld at
gmail.com>

Please let me know if I need to provide any additional information.

Best,

Mauro

---

Prof. Mauro Castro, MD, PhD
Bioinformatics & Systems Biology Lab
Polytechnic Center
Federal University of Parana - UFPR
Rua Alcides Vieira Arcoverde, 1225
Curitiba - PR 81520-260 - Brazil

e-mail: mauro.castro at ufpr.br / mauro.a.castro at gmail.com
phone: +55-41-33614906
skype: mauro.a.castro
http://lattes.cnpq.br/6484877487662355



This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee
or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have
received this message in error, please notify the sender immediately
by
e-mail and delete this email message from your computer. Thank you.

--
Nitesh Turaga

This email message may contain legally privileged and/or confidential
information.  If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited.  If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.

On Oct 2, 2017, at 9:57 AM, m castro <mauro.a.castro at gmail.com> wrote:

Hi Nitesh,

Thank you.

In the submission of these packages, Vinicius and Clarice had included
all the team as maintainers (I can confirm in the packages' homepages,
below), not sure why it did not work at that occasion.

http://bioconductor.org/packages/RTNduals/

http://bioconductor.org/packages/RTNsurvival/

Best,

Mauro

On 2 October 2017 at 10:50, Vinicius Saraiva Chagas
<chagas.vis at gmail.com> wrote:

Hello Nitesh,

Thank you very much for the support. I totally agree with that.

Best,
Vinicius

On Mon, Oct 2, 2017 at 10:44 AM Turaga, Nitesh
<Nitesh.Turaga at roswellpark.org> wrote:

Hi Mauro

Please always forward your git questions to bioc-devel. There is more than
one person handling the issues about git.

RTNsurvival, ? Clari Groeneveld is the maintainer hence you don?t have
write access.

RTNduals ? Vinicius Chagas is the listed maintainer on our system.

This issue is because our SVN system also had only Clari and Vinicius as
primary maintainers. I am adding them in my reply as well, and I?m guessing
they are both fine with me adding you to our system for these packages?

Best,

Nitesh

On Oct 2, 2017, at 9:29 AM, Nitesh <nitesh.turaga at gmail.com> wrote:



---------- Forwarded message ---------
From: m castro <mauro.a.castro at gmail.com>
Date: Mon, 2 Oct 2017 at 09:13
Subject: Re: write access to RTNduals and RTNsurvival
To: Obenchain, Valerie <Valerie.Obenchain at roswellpark.org>
Cc: Clarice Groeneveld <clari.groeneveld at gmail.com>, Vinicius Saraiva
Chagas <chagas.vis at gmail.com>, Nitesh <nitesh.turaga at gmail.com>


Hi Valerie,

I just thought the subject would not be of interest to a large list of
bioc developers. But yes, thank you very much for forwarding to
Nitesh.

Regards,

Mauro


On 2 October 2017 at 09:36, Obenchain, Valerie
<Valerie.Obenchain at roswellpark.org> wrote:

Hi Maruo,

Was there a  particular reason you didn't write to
bioc-devel at r-project.org?
That's where all svn ->git transition questions are being answered and
it's
much easier to manage than forwarding personal emails.

Nitesh and Martin have been handling the svn -> git transition and
I've cc'd
Nitesh on this message. @Nitesh, can you please help Mauro?

Thanks.
Val



On 09/29/2017 04:02 PM, m castro wrote:

Dear Valerie,

I am sorry for writing this email directly to you (not via
r-project.org mailing list).

It is related to write access to two packages of my group (RTNduals
and RTNsurvival). I am one of the active maintainers of these
packages, but it seems I no-longer have write access via git. Given
that I've successfully concluded the migration process (from svn to
git) for other packages (e.g. RTN, RedeR and geneplast), then I
decided I should contact you for this help.

Here is my GitHub ID and contact information at the packages'
homepage.

# GitHub id: castromaa
# Bioc maintainer contact: Mauro A. A. Castro <mauro.a.castro at
gmail.com>

For reference, please see below the message when I try to push
RTNduals via
git:

$ git push origin master
FATAL: W any packages/RTNduals m.castro DENIED by fallthru (or you
mis-spelled the reponame)
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.

If possible, there is another member of my group that is facing the
same problem (Clarice Groeneveld). She is also an active maintainer of
RTNduals (as indicated at the package's homepage):

# GitHub id: csgroen
# Bioc maintainer contact: Clarice Groeneveld <clari.groeneveld at
gmail.com>

Please let me know if I need to provide any additional information.

Best,

Mauro

---

Prof. Mauro Castro, MD, PhD
Bioinformatics & Systems Biology Lab
Polytechnic Center
Federal University of Parana - UFPR
Rua Alcides Vieira Arcoverde, 1225
Curitiba - PR 81520-260 - Brazil

e-mail: mauro.castro at ufpr.br / mauro.a.castro at gmail.com
phone: +55-41-33614906
skype: mauro.a.castro
http://lattes.cnpq.br/6484877487662355



This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee
or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have
received this message in error, please notify the sender immediately
by
e-mail and delete this email message from your computer. Thank you.

--
Nitesh Turaga

This email message may contain legally privileged and/or confidential
information.  If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited.  If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.

Hi Nitesh,

Thank you.

In the submission of these packages, Vinicius and Clarice had included
all the team as maintainers (I can confirm in the packages' homepages,
below), not sure why it did not work at that occasion.

http://bioconductor.org/packages/RTNduals/

http://bioconductor.org/packages/RTNsurvival/

Best,

Mauro

On 2 October 2017 at 10:50, Vinicius Saraiva Chagas
<chagas.vis at gmail.com> wrote:

Hello Nitesh,

Thank you very much for the support. I totally agree with that.

Best,
Vinicius

On Mon, Oct 2, 2017 at 10:44 AM Turaga, Nitesh
<Nitesh.Turaga at roswellpark.org> wrote:

Hi Mauro

Please always forward your git questions to bioc-devel. There is more than
one person handling the issues about git.

RTNsurvival, ? Clari Groeneveld is the maintainer hence you don?t have
write access.

RTNduals ? Vinicius Chagas is the listed maintainer on our system.

This issue is because our SVN system also had only Clari and Vinicius as
primary maintainers. I am adding them in my reply as well, and I?m guessing
they are both fine with me adding you to our system for these packages?

Best,

Nitesh

On Oct 2, 2017, at 9:29 AM, Nitesh <nitesh.turaga at gmail.com> wrote:



---------- Forwarded message ---------
From: m castro <mauro.a.castro at gmail.com>
Date: Mon, 2 Oct 2017 at 09:13
Subject: Re: write access to RTNduals and RTNsurvival
To: Obenchain, Valerie <Valerie.Obenchain at roswellpark.org>
Cc: Clarice Groeneveld <clari.groeneveld at gmail.com>, Vinicius Saraiva
Chagas <chagas.vis at gmail.com>, Nitesh <nitesh.turaga at gmail.com>


Hi Valerie,

I just thought the subject would not be of interest to a large list of
bioc developers. But yes, thank you very much for forwarding to
Nitesh.

Regards,

Mauro


On 2 October 2017 at 09:36, Obenchain, Valerie
<Valerie.Obenchain at roswellpark.org> wrote:

Hi Maruo,

Was there a  particular reason you didn't write to
bioc-devel at r-project.org?
That's where all svn ->git transition questions are being answered and
it's
much easier to manage than forwarding personal emails.

Nitesh and Martin have been handling the svn -> git transition and
I've cc'd
Nitesh on this message. @Nitesh, can you please help Mauro?

Thanks.
Val



On 09/29/2017 04:02 PM, m castro wrote:

Dear Valerie,

I am sorry for writing this email directly to you (not via
r-project.org mailing list).

It is related to write access to two packages of my group (RTNduals
and RTNsurvival). I am one of the active maintainers of these
packages, but it seems I no-longer have write access via git. Given
that I've successfully concluded the migration process (from svn to
git) for other packages (e.g. RTN, RedeR and geneplast), then I
decided I should contact you for this help.

Here is my GitHub ID and contact information at the packages'
homepage.

# GitHub id: castromaa
# Bioc maintainer contact: Mauro A. A. Castro <mauro.a.castro at
gmail.com>

For reference, please see below the message when I try to push
RTNduals via
git:

$ git push origin master
FATAL: W any packages/RTNduals m.castro DENIED by fallthru (or you
mis-spelled the reponame)
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.

If possible, there is another member of my group that is facing the
same problem (Clarice Groeneveld). She is also an active maintainer of
RTNduals (as indicated at the package's homepage):

# GitHub id: csgroen
# Bioc maintainer contact: Clarice Groeneveld <clari.groeneveld at
gmail.com>

Please let me know if I need to provide any additional information.

Best,

Mauro

---

Prof. Mauro Castro, MD, PhD
Bioinformatics & Systems Biology Lab
Polytechnic Center
Federal University of Parana - UFPR
Rua Alcides Vieira Arcoverde, 1225
Curitiba - PR 81520-260 - Brazil

e-mail: mauro.castro at ufpr.br / mauro.a.castro at gmail.com
phone: +55-41-33614906
skype: mauro.a.castro
http://lattes.cnpq.br/6484877487662355



This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee
or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have
received this message in error, please notify the sender immediately
by
e-mail and delete this email message from your computer. Thank you.

--
Nitesh Turaga

This email message may contain legally privileged and/or confidential
information.  If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited.  If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.

On 10/02/2017 09:57 AM, m castro wrote:

Hi Nitesh,

Thank you.

In the submission of these packages, Vinicius and Clarice had included
all the team as maintainers (I can confirm in the packages' homepages,
below), not sure why it did not work at that occasion.

We encourage just a single maintainer, so that we do not have to engage in
'whack-a-maintainer' when issues come up.

For this reason, only a single person is given write access, unless other
permissions are explicitly requested. If your package is maintained in
github and then pushed to Bioconductor, it is easy for one person to serve
as maintainer and regulate who else contributes to the project through
github collaborators or pull requests; this kind of administrative structure
is likely both more flexible and robust for managing group contributions.

Martin

http://bioconductor.org/packages/RTNduals/

http://bioconductor.org/packages/RTNsurvival/

Best,

Mauro

On 2 October 2017 at 10:50, Vinicius Saraiva Chagas
<chagas.vis at gmail.com> wrote:

Hello Nitesh,

Thank you very much for the support. I totally agree with that.

Best,
Vinicius

On Mon, Oct 2, 2017 at 10:44 AM Turaga, Nitesh
<Nitesh.Turaga at roswellpark.org> wrote:

Hi Mauro

Please always forward your git questions to bioc-devel. There is more
than
one person handling the issues about git.

RTNsurvival, ? Clari Groeneveld is the maintainer hence you don?t have
write access.

RTNduals ? Vinicius Chagas is the listed maintainer on our system.

This issue is because our SVN system also had only Clari and Vinicius as
primary maintainers. I am adding them in my reply as well, and I?m
guessing
they are both fine with me adding you to our system for these packages?

Best,

Nitesh

On Oct 2, 2017, at 9:29 AM, Nitesh <nitesh.turaga at gmail.com> wrote:



---------- Forwarded message ---------
From: m castro <mauro.a.castro at gmail.com>
Date: Mon, 2 Oct 2017 at 09:13
Subject: Re: write access to RTNduals and RTNsurvival
To: Obenchain, Valerie <Valerie.Obenchain at roswellpark.org>
Cc: Clarice Groeneveld <clari.groeneveld at gmail.com>, Vinicius Saraiva
Chagas <chagas.vis at gmail.com>, Nitesh <nitesh.turaga at gmail.com>


Hi Valerie,

I just thought the subject would not be of interest to a large list of
bioc developers. But yes, thank you very much for forwarding to
Nitesh.

Regards,

Mauro


On 2 October 2017 at 09:36, Obenchain, Valerie
<Valerie.Obenchain at roswellpark.org> wrote:

Hi Maruo,

Was there a  particular reason you didn't write to
bioc-devel at r-project.org?
That's where all svn ->git transition questions are being answered and
it's
much easier to manage than forwarding personal emails.

Nitesh and Martin have been handling the svn -> git transition and
I've cc'd
Nitesh on this message. @Nitesh, can you please help Mauro?

Thanks.
Val



On 09/29/2017 04:02 PM, m castro wrote:

Dear Valerie,

I am sorry for writing this email directly to you (not via
r-project.org mailing list).

It is related to write access to two packages of my group (RTNduals
and RTNsurvival). I am one of the active maintainers of these
packages, but it seems I no-longer have write access via git. Given
that I've successfully concluded the migration process (from svn to
git) for other packages (e.g. RTN, RedeR and geneplast), then I
decided I should contact you for this help.

Here is my GitHub ID and contact information at the packages'
homepage.

# GitHub id: castromaa
# Bioc maintainer contact: Mauro A. A. Castro <mauro.a.castro at
gmail.com>

For reference, please see below the message when I try to push
RTNduals via
git:

$ git push origin master
FATAL: W any packages/RTNduals m.castro DENIED by fallthru (or you
mis-spelled the reponame)
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.

If possible, there is another member of my group that is facing the
same problem (Clarice Groeneveld). She is also an active maintainer of
RTNduals (as indicated at the package's homepage):

# GitHub id: csgroen
# Bioc maintainer contact: Clarice Groeneveld <clari.groeneveld at
gmail.com>

Please let me know if I need to provide any additional information.

Best,

Mauro

---

Prof. Mauro Castro, MD, PhD
Bioinformatics & Systems Biology Lab
Polytechnic Center
Federal University of Parana - UFPR
Rua Alcides Vieira Arcoverde, 1225
Curitiba - PR 81520-260 - Brazil

e-mail: mauro.castro at ufpr.br / mauro.a.castro at gmail.com
phone: +55-41-33614906
skype: mauro.a.castro
http://lattes.cnpq.br/6484877487662355



This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee
or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have
received this message in error, please notify the sender immediately
by
e-mail and delete this email message from your computer. Thank you.

--
Nitesh Turaga

This email message may contain legally privileged and/or confidential
information.  If you are not the intended recipient(s), or the employee
or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited.  If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.

This email message may contain legally privileged and/or confidential
information.  If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited.  If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.