Hi, I'm the new maintainer of the groHMM package which is having issues in its build. In that view I would like to update the package but it won't allow me since my email is not on file with the maintainer of bioconductor package. Can you please list the steps to have me listed as a maintainer and update the package on bioconductor/git. Let me know. Regards, Tulip. ________________________________ UT Southwestern Medical Center The future of medicine, today.
[Bioc-devel] New maintainer for package - Updating a R package and pushing the commit
5 messages · Tulip Nandu, Hervé Pagès, Shepherd, Lori
a few points: Normally only one person has maintainer access to a package this currently was Anusha Nagari <anusha.nagari at utsouthwestern.edu>. Should they also retain maintainer access? Anusha was assigned because that is who is listed with Authors at R. You currently have a mixure of using Authors at R and Maintainer/Author field. Please remove Author/Maintainer fields and only use Authors at R. In a normal procedure the currently listed maintainer would request the switch or additional access. Since I see you listed in the Maintainer field, we can ignore this step for this situation. I will need to create an account on our GitCredentials where you can manage your ssh keys for access. We can link a github account for access. Do you have a personal github account you would like associated with; if so please provide your github username? Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu>
Sent: Wednesday, September 28, 2022 5:15 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] New maintainer for package - Updating a R package and pushing the commit
Sent: Wednesday, September 28, 2022 5:15 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] New maintainer for package - Updating a R package and pushing the commit
Hi,
I'm the new maintainer of the groHMM package which is having issues in its build.
In that view I would like to update the package but it won't allow me since my email is not on file with the maintainer of bioconductor package.
Can you please list the steps to have me listed as a maintainer and update the package on bioconductor/git.
Let me know.
Regards,
Tulip.
________________________________
UT Southwestern
Medical Center
The future of medicine, today.
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel at r-project.org mailing list
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This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Hi Kern, Anusha no longer is associated with the lab. So I will need to have access to the package. If you can create an account on GitCredentials that would be great. I do have a github account. tulipnandu is the username. https://github.com/tulipnandu [https://avatars.githubusercontent.com/u/1099843?v=4?s=400]<https://github.com/tulipnandu> tulipnandu - Overview<https://github.com/tulipnandu> tulipnandu has 10 repositories available. Follow their code on GitHub. github.com Also I would need to push the changes in the src file to master on bioconductor/git. If I can get some help with that, it would be great too. Regards, Tulip.
From: Kern, Lori <Lori.Shepherd at RoswellPark.org>
Sent: Thursday, September 29, 2022 6:52 AM
To: Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu>; bioc-devel at r-project.org <bioc-devel at r-project.org>; Anusha Nagari <Anusha.Nagari at UTSouthwestern.edu>
Subject: Re: New maintainer for package - Updating a R package and pushing the commit
Sent: Thursday, September 29, 2022 6:52 AM
To: Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu>; bioc-devel at r-project.org <bioc-devel at r-project.org>; Anusha Nagari <Anusha.Nagari at UTSouthwestern.edu>
Subject: Re: New maintainer for package - Updating a R package and pushing the commit
EXTERNAL MAIL This message was sent securely using Zix?<http://www.zixcorp.com/get-started/> a few points: Normally only one person has maintainer access to a package this currently was Anusha Nagari <anusha.nagari at utsouthwestern.edu>. Should they also retain maintainer access? Anusha was assigned because that is who is listed with Authors at R. You currently have a mixure of using Authors at R and Maintainer/Author field. Please remove Author/Maintainer fields and only use Authors at R. In a normal procedure the currently listed maintainer would request the switch or additional access. Since I see you listed in the Maintainer field, we can ignore this step for this situation. I will need to create an account on our GitCredentials where you can manage your ssh keys for access. We can link a github account for access. Do you have a personal github account you would like associated with; if so please provide your github username? Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu> Sent: Wednesday, September 28, 2022 5:15 PM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] New maintainer for package - Updating a R package and pushing the commit Hi, I'm the new maintainer of the groHMM package which is having issues in its build. In that view I would like to update the package but it won't allow me since my email is not on file with the maintainer of bioconductor package. Can you please list the steps to have me listed as a maintainer and update the package on bioconductor/git. Let me know. Regards, Tulip. ________________________________ UT Southwestern Medical Center The future of medicine, today. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/153TPO9q9LgJcIfq7xj6UvgBc8nFbtHT8ZYZQGFIIs9ZSk4A7ilw0CeI7TbK_V6bYIx6ThYomprV1f_aLbd2S7a4YeVDdjcKH03QZSE2kEv9_cNUrEpbkAGk1iajxtenYsDmTonDkJbZIeg-IoB4g0iaPG_jCRjh5agFEcsI__iP6x9liTUj5A10Dg00kng9WU4FVkpjP43oIF598TjRkpatlZZje1T_Uia_oVEIB40G8FCCId7tn4Ma2qwItlJv02H_hbkaC51OFRBiEs01TpHluUuNezGZ0_C3uhIT4KIFVO5xO4VHhGZplznuonJ4r/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This message was secured by Zix<http://www.zixcorp.com>?. CAUTION: This email originated from outside UTSW. Please be cautious of links or attachments, and validate the sender's email address before replying.
Hi Tulip,
On 29/09/2022 13:52, Tulip Nandu wrote:
Hi Kern, Anusha no longer is associated with the lab. So I will need to have access to the package. If you can create an account on GitCredentials that would be great.
If that means Anusha is no longer going to maintain the package, then their role in Authors at R would need to be switched from "cre" to "aut" or "ctb" or whatever is appropriate. As Lori said, the Maintainer and Author fields should get removed, and your name and role moved to the Authors at R field. Thanks, H.
I do have a github account. tulipnandu is the username. https://github.com/tulipnandu [https://avatars.githubusercontent.com/u/1099843?v=4?s=400]<https://github.com/tulipnandu> tulipnandu - Overview<https://github.com/tulipnandu> tulipnandu has 10 repositories available. Follow their code on GitHub. github.com Also I would need to push the changes in the src file to master on bioconductor/git. If I can get some help with that, it would be great too. Regards, Tulip.
________________________________ From: Kern, Lori <Lori.Shepherd at RoswellPark.org> Sent: Thursday, September 29, 2022 6:52 AM To: Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu>; bioc-devel at r-project.org <bioc-devel at r-project.org>; Anusha Nagari <Anusha.Nagari at UTSouthwestern.edu> Subject: Re: New maintainer for package - Updating a R package and pushing the commit EXTERNAL MAIL This message was sent securely using Zix?<http://www.zixcorp.com/get-started/> a few points: Normally only one person has maintainer access to a package this currently was Anusha Nagari <anusha.nagari at utsouthwestern.edu>. Should they also retain maintainer access? Anusha was assigned because that is who is listed with Authors at R. You currently have a mixure of using Authors at R and Maintainer/Author field. Please remove Author/Maintainer fields and only use Authors at R. In a normal procedure the currently listed maintainer would request the switch or additional access. Since I see you listed in the Maintainer field, we can ignore this step for this situation. I will need to create an account on our GitCredentials where you can manage your ssh keys for access. We can link a github account for access. Do you have a personal github account you would like associated with; if so please provide your github username? Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu> Sent: Wednesday, September 28, 2022 5:15 PM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] New maintainer for package - Updating a R package and pushing the commit Hi, I'm the new maintainer of the groHMM package which is having issues in its build. In that view I would like to update the package but it won't allow me since my email is not on file with the maintainer of bioconductor package. Can you please list the steps to have me listed as a maintainer and update the package on bioconductor/git. Let me know. Regards, Tulip. ________________________________ UT Southwestern Medical Center The future of medicine, today. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/153TPO9q9LgJcIfq7xj6UvgBc8nFbtHT8ZYZQGFIIs9ZSk4A7ilw0CeI7TbK_V6bYIx6ThYomprV1f_aLbd2S7a4YeVDdjcKH03QZSE2kEv9_cNUrEpbkAGk1iajxtenYsDmTonDkJbZIeg-IoB4g0iaPG_jCRjh5agFEcsI__iP6x9liTUj5A10Dg00kng9WU4FVkpjP43oIF598TjRkpatlZZje1T_Uia_oVEIB40G8FCCId7tn4Ma2qwItlJv02H_hbkaC51OFRBiEs01TpHluUuNezGZ0_C3uhIT4KIFVO5xO4VHhGZplznuonJ4r/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This message was secured by Zix<http://www.zixcorp.com>?. CAUTION: This email originated from outside UTSW. Please be cautious of links or attachments, and validate the sender's email address before replying. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Herv? Pag?s Bioconductor Core Team hpages.on.github at gmail.com
I will create your git credentials account and send you the temporary password in a private email. Please do as Herve says by altering the DESCRIPTION and pushing to git.bioconductor.org. You will be responsible for pushing the changes to git.bioconductor.org. You can find many details at https://contributions.bioconductor.org/git-version-control.html Most immediately helpful will probably be the following for assistance setting up remotes: https://contributions.bioconductor.org/git-version-control.html#new-package-workflow Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Herv? Pag?s <hpages.on.github at gmail.com>
Sent: Thursday, September 29, 2022 5:58 PM
To: Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu>; Kern, Lori <Lori.Shepherd at RoswellPark.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] New maintainer for package - Updating a R package and pushing the commit
Sent: Thursday, September 29, 2022 5:58 PM
To: Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu>; Kern, Lori <Lori.Shepherd at RoswellPark.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] New maintainer for package - Updating a R package and pushing the commit
Hi Tulip, On 29/09/2022 13:52, Tulip Nandu wrote: > Hi Kern, > > Anusha no longer is associated with the lab. So I will need to have access to the package. If you can create an account on GitCredentials that would be great. If that means Anusha is no longer going to maintain the package, then their role in Authors at R would need to be switched from "cre" to "aut" or "ctb" or whatever is appropriate. As Lori said, the Maintainer and Author fields should get removed, and your name and role moved to the Authors at R field. Thanks, H. > > I do have a github account. tulipnandu is the username. > > > https://secure-web.cisco.com/1sz7apuCmn4ohmCI87ibLXfXf2HV76G22UDgL3c3S3mC74LaBD59xyHINjjvQZLobFGBIwBE7uBbAQG37cd6fpIfYTT-kESDUcqUjRDfAHF4aUfYld15UCItSNFsgmKPXcaM9JTp9DMpiG1yWqineSY-XvOvciOmBslTzPrQTjSmnCjcV9Bjig7kPR2UV6bOQ-kee1qnpXXfQRK3WAmpK6A6mAuodm_ae5UfmtS7Obzwxs5SApgpFc0DjM8uCcxyJVpmOWhu7UiHYQdlS9h2j92Jx6qgxDDca79fUi7LcRE1zCLWjNjx7geIuxylxLuBK/https%3A%2F%2Fgithub.com%2Ftulipnandu > [https://secure-web.cisco.com/1WFyb-uH1KKqS_8qxzHe822g-zoOK-K98o8CvfWtriy_VQsnIhXz5TmS-XLutbI4QuJJlr-jDUjeUwXnK_B05kL99Byvz6rZkxnMoOCNuc4beIgaVCv5o9pancBV5rRnZzP0EByH5mcEREDgmAsTRnHU7-cT7OVhSx-_GAPy6VsSjw7mI37X1_FHLlhC0j_3wJrruV-sbUAm00rPfcPt2UzLUjVUKaw-WnB7sS5X7B2D3TaS5K4tYfFi8QZ5khtk6JMvRZNoMMNGU8J5lV38h6T1HFnAA12zDhGTJ_UoiRSff1ndxBOKjZJVJzSb7oNYl/https%3A%2F%2Favatars.githubusercontent.com%2Fu%2F1099843%3Fv%3D4%3Fs%3D400<https://secure-web.cisco.com/1sz7apuCmn4ohmCI87ibLXfXf2HV76G22UDgL3c3S3mC74LaBD59xyHINjjvQZLobFGBIwBE7uBbAQG37cd6fpIfYTT-kESDUcqUjRDfAHF4aUfYld15UCItSNFsgmKPXcaM9JTp9DMpiG1yWqineSY-XvOvciOmBslTzPrQTjSmnCjcV9Bjig7kPR2UV6bOQ-kee1qnpXXfQRK3WAmpK6A6mAuodm_ae5UfmtS7Obzwxs5SApgpFc0DjM8uCcxyJVpmOWhu7UiHYQdlS9h2j92Jx6qgxDDca79fUi7LcRE1zCLWjNjx7geIuxylxLuBK/https%3A%2F%2Fgithub.com%2Ftulipnandu> > tulipnandu - Overview<https://secure-web.cisco.com/1sz7apuCmn4ohmCI87ibLXfXf2HV76G22UDgL3c3S3mC74LaBD59xyHINjjvQZLobFGBIwBE7uBbAQG37cd6fpIfYTT-kESDUcqUjRDfAHF4aUfYld15UCItSNFsgmKPXcaM9JTp9DMpiG1yWqineSY-XvOvciOmBslTzPrQTjSmnCjcV9Bjig7kPR2UV6bOQ-kee1qnpXXfQRK3WAmpK6A6mAuodm_ae5UfmtS7Obzwxs5SApgpFc0DjM8uCcxyJVpmOWhu7UiHYQdlS9h2j92Jx6qgxDDca79fUi7LcRE1zCLWjNjx7geIuxylxLuBK/https%3A%2F%2Fgithub.com%2Ftulipnandu> > tulipnandu has 10 repositories available. Follow their code on GitHub. > github.com > Also I would need to push the changes in the src file to master on bioconductor/git. If I can get some help with that, it would be great too. > > Regards, > > Tulip. > > ________________________________ > From: Kern, Lori <Lori.Shepherd at RoswellPark.org> > Sent: Thursday, September 29, 2022 6:52 AM > To: Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu>; bioc-devel at r-project.org <bioc-devel at r-project.org>; Anusha Nagari <Anusha.Nagari at UTSouthwestern.edu> > Subject: Re: New maintainer for package - Updating a R package and pushing the commit > > > EXTERNAL MAIL > > This message was sent securely using Zix?<http://secure-web.cisco.com/1u21LTpbZnpvMlJpYSUJfpcqlUIF9iZZ-XXgvnG9T6wz2HtFzfnPIaY65TC4DlxRu8hrNeUctPgOq5apCZC6W9L9nrnQCU4M9fxtv6CsKzIlYbjasmWlPkHy-kSPDrBBSCGb-l70bhjXVU3QiC2LeQ1QkF9wEnyNAo8O-zak8mE_-PfFPsuZJPqGHz5JAHvRqlHBh1yTeHJFvL7d-ifVibwBMZkCpilJKIZsKdH2LNpjzeUcGBVADV8CvsSa_wjN9sFhogGuDhtam9Uv8AGygibxbVlpSTkM7J0jtB1AKH4XtQUKgq-gLibh-uTSrVBy5/http%3A%2F%2Fwww.zixcorp.com%2Fget-started%2F> > > a few points: > > Normally only one person has maintainer access to a package this currently was Anusha Nagari <anusha.nagari at utsouthwestern.edu>. Should they also retain maintainer access? > > Anusha was assigned because that is who is listed with Authors at R. You currently have a mixure of using Authors at R and Maintainer/Author field. Please remove Author/Maintainer fields and only use Authors at R. > > In a normal procedure the currently listed maintainer would request the switch or additional access. Since I see you listed in the Maintainer field, we can ignore this step for this situation. I will need to create an account on our GitCredentials where you can manage your ssh keys for access. We can link a github account for access. Do you have a personal github account you would like associated with; if so please provide your github username? > > Cheers, > > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ________________________________ > From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Tulip Nandu <Tulip.Nandu at UTSouthwestern.edu> > Sent: Wednesday, September 28, 2022 5:15 PM > To: bioc-devel at r-project.org <bioc-devel at r-project.org> > Subject: [Bioc-devel] New maintainer for package - Updating a R package and pushing the commit > > Hi, > > I'm the new maintainer of the groHMM package which is having issues in its build. > > In that view I would like to update the package but it won't allow me since my email is not on file with the maintainer of bioconductor package. > > Can you please list the steps to have me listed as a maintainer and update the package on bioconductor/git. > > Let me know. > > Regards, > > Tulip. > > > ________________________________ > > UT Southwestern > > Medical Center > > The future of medicine, today. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel at r-project.org mailing list > https://secure-web.cisco.com/153TPO9q9LgJcIfq7xj6UvgBc8nFbtHT8ZYZQGFIIs9ZSk4A7ilw0CeI7TbK_V6bYIx6ThYomprV1f_aLbd2S7a4YeVDdjcKH03QZSE2kEv9_cNUrEpbkAGk1iajxtenYsDmTonDkJbZIeg-IoB4g0iaPG_jCRjh5agFEcsI__iP6x9liTUj5A10Dg00kng9WU4FVkpjP43oIF598TjRkpatlZZje1T_Uia_oVEIB40G8FCCId7tn4Ma2qwItlJv02H_hbkaC51OFRBiEs01TpHluUuNezGZ0_C3uhIT4KIFVO5xO4VHhGZplznuonJ4r/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. > > This message was secured by Zix<http://secure-web.cisco.com/1hOcf3ufjKJkcyeaYkP6_2uvsUGNgDY78zN6rPrP3r-EyJJfgChqzfOO5bhJZ5u842IsJVzttzmANcQWWHDcBxVEwlPdIJf3dmj5TcHN_psHZmbJm44pG9EWEokjHieXYylvFAJgHSaCILjsHlaoIHcbsXBGHsCc40LG5MlXoinO3s2z5I2deKbuAfJ0bg22pjAENKJkkcCyUijgtstf6xO4OSX_ZfOMVkK1vxp_4lwa6fQlrjYKVwzP7qabNJTQvYF_EF1gSY1Svu9k_yQc7QaSGq-EEpg-offhjmYa4rHdpqEm5ga2kSP1L0-v3M883/http%3A%2F%2Fwww.zixcorp.com>?. > > CAUTION: This email originated from outside UTSW. Please be cautious of links or attachments, and validate the sender's email address before replying. > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioc-devel at r-project.org mailing list > https://secure-web.cisco.com/1LppOzMn0mnYhzqgOdYMZj4WyEqooI9lH5w7xWQnrivtOzrjloi4F48PtRWJ9-GuusDuJqN4aOzp0ONy4Ok6CRKRXLN1swf11fYAwPFueSpErYjkJcNFEFH5XLL0NgfFoy3SmKY3hm2Me-d6qtXtmow6VY9EiLUKq1VWZBVV9dWwJVnAeUZJFYRWf8WZNHBhLWhrXlvLihPwvOZBiaL0ArlCPAblCIPVIwsDjw00eT3Ke8TWr2_E8QJ2h4IwCpb5bXz3urYcvdH7varlnnQYvhOslYo5PDqJEPlFqvjf-5bKDFkOZHK0MWk-fnFA1j1IV/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel -- Herv? Pag?s Bioconductor Core Team hpages.on.github at gmail.com This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.