I am working on getting a package ready for Bioconductor called motifbreakR. http://bioconductor.org/spb_reports/motifbreakR_0.99.7_buildreport_20150818123558.html#moscato1_buildsrc_anchor This is the build report. My package has as part of it?s plotting function, the necessity of producing a temporary file that is read back in. This is likely where the issue lies, but I?m not entirely sure about the build environment, and where exactly the permissions issue lies. I am able produce the package on a local windows install; this includes the generation of the vignette during the build. Thanks for looking at this. Simon Gert Coetzee Research Biostatistician Department of Biomedical Sciences ?????????????????????????????????????????? Cedars-Sinai Medical Center Advanced Health Sciences Pavilion 8th Floor 127 S. San Vicente Blvd. Los Angles, CA 90048 ?? Phone: 424.315.2651 ?? E-mail:Simon.Coetzee at cshs.org<https://csmail.csmc.edu/owa/UrlBlockedError.aspx> IMPORTANT WARNING: This message is intended for the use of the person or entity to which it is addressed and may contain information that is privileged and confidential, the disclosure of which is governed by applicable law. If the reader of this message is not the intended recipient, or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this information is strictly prohibited. Thank you for your cooperation.
[Bioc-devel] Windows build error: cannot open file 'C:\Users\pkgbuild\AppData\Local\Temp\RtmpaEUpE0\xshell23645160444e': Permission denied
2 messages · Coetzee, Simon G, Dan Tenenbaum
Often these kind of permission issues on windows have to do with using parallel resources and not cleaning up properly. It sometimes doesn't matter on other OSes, but windows is particular about it. For example, if you start a socket cluster, you must close it when you are done using it. Dan ----- Original Message -----
From: "Simon G Coetzee" <Simon.Coetzee at cshs.org> To: bioc-devel at r-project.org Sent: Friday, August 21, 2015 11:10:37 AM Subject: [Bioc-devel] Windows build error: cannot open file 'C:\Users\pkgbuild\AppData\Local\Temp\RtmpaEUpE0\xshell23645160444e': Permission denied I am working on getting a package ready for Bioconductor called motifbreakR. http://bioconductor.org/spb_reports/motifbreakR_0.99.7_buildreport_20150818123558.html#moscato1_buildsrc_anchor This is the build report. My package has as part of it?s plotting function, the necessity of producing a temporary file that is read back in. This is likely where the issue lies, but I?m not entirely sure about the build environment, and where exactly the permissions issue lies. I am able produce the package on a local windows install; this includes the generation of the vignette during the build. Thanks for looking at this. Simon Gert Coetzee Research Biostatistician Department of Biomedical Sciences ?????????????????????????????????????????? Cedars-Sinai Medical Center Advanced Health Sciences Pavilion 8th Floor 127 S. San Vicente Blvd. Los Angles, CA 90048 ?? Phone: 424.315.2651 ?? E-mail:Simon.Coetzee at cshs.org<https://csmail.csmc.edu/owa/UrlBlockedError.aspx> IMPORTANT WARNING: This message is intended for the use of the person or entity to which it is addressed and may contain information that is privileged and confidential, the disclosure of which is governed by applicable law. If the reader of this message is not the intended recipient, or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this information is strictly prohibited. Thank you for your cooperation. [[alternative HTML version deleted]]
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