Hi Lori,
Thank you for your help. I was able to reproduce the issue locally after
updating the packages. I updated the vignette with the changes and pushed
it on both RELEASE_3_9 and the development (3_10) branches. Again thank you
for your help!
Regards,
Ashish Jain
On Tue, Sep 17, 2019 at 7:06 AM Shepherd, Lori <
Lori.Shepherd at roswellpark.org> wrote:
I am able to reproduce the ERROR. It seems to be an issue of trying to
subset.
head(exp %>% gather(Tissue)) Tissue value
1 Adipose Tissue 1.63226821549951
2 Adipose Tissue 0
3 Adipose Tissue 0
4 Adipose Tissue 0.485426827170242
5 Adipose Tissue 0.584962500721156
6 Adipose Tissue 3.05311133645956> head(exp %>% gather(Tissue=1:(ncol(exp)-1)))Error: 1 components of `...` had unexpected names.
We detected these problematic arguments:
* `Tissue`
Did you misspecify an argument?Call `rlang::last_error()` to see a backtrace
You can see if there were any recent changes to package you depend on that
could have caused this. A package you depend on may have changed their
functionality. I needed to update packages (with BiocManager::install()
update all ) in order to reproduce.
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------
*From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Ashish
Jain <jain at iastate.edu>
*Sent:* Monday, September 16, 2019 3:08 PM
*To:* bioc-devel at r-project.org <bioc-devel at r-project.org>
*Subject:* [Bioc-devel] Fwd: TissueEnrich problems reported in the
Multiple platform build/check report for BioC 3.9
Hi All,
I just got the message that my package is giving an error during the build
process on Bioconductor build server. I saw the logs and found it is
failing while building the vignette. I am not sure why it's happening as I
have not updated the package since release and it was building without any
errors. Can someone look into this?
Regards,
Ashish Jain
---------- Forwarded message ---------
From: <BBS-noreply at bioconductor.org>
Date: Mon, Sep 16, 2019 at 1:59 PM
Subject: TissueEnrich problems reported in the Multiple platform
build/check report for BioC 3.9
To: <jain at iastate.edu>
[This is an automatically generated email. Please don't reply.]
Hi TissueEnrich maintainer,
According to the Multiple platform build/check report for BioC 3.9,
the TissueEnrich package has the following problem(s):
o ERROR for 'R CMD build' on malbec2. See the details here:
https://urldefense.proofpoint.com/v2/url?u=https-3A__master.bioconductor.org_checkResults_3.9_bioc-2DLATEST_TissueEnrich_malbec2-2Dbuildsrc.html&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=o1sr-o_MvUhGrSGKx6vufW6iDzp84bUofNfcGxAtObw&s=sA7mdXKmscGnnwrA2a-Dh9P7BpaJOuqIdbh1X6qTaAw&e=
Please take the time to address this by committing and pushing
changes to your package at git.bioconductor.org
Notes:
* This was the status of your package at the time this email was sent to
you.
Given that the online report is updated daily (in normal conditions)
you
could see something different when you visit the URL(s) above,
especially if
you do so several days after you received this email.
* It is possible that the problems reported in this report are false
positives,
either because another package (from CRAN or Bioconductor) breaks your
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If this is the case, then you can ignore this email.
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Thanks for contributing to the Bioconductor project!
--
Regards,
Ashish Jain
Ph.D. Candidate
Bioinformatics and Computational Biology
Iowa State University
Ph +1-317-529-7973
Website: *https://urldefense.proofpoint.com/v2/url?u=https-3A__ashishjain1988.github.io&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=o1sr-o_MvUhGrSGKx6vufW6iDzp84bUofNfcGxAtObw&s=EwM1zfwfJ7aRuNkay1qqCrf6BW291hXiN-1fbtIqWYY&e=
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