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[Bioc-devel] Install and check error in Windows without any relevant message

4 messages · Hervé Pagès, Ramon Diaz-Uriarte

Original
Ramon Diaz-Uriarte
# 
Dear All,

I package I maintain (OncoSimulR), which has not experienced any changes in
the last week, has failed Install and Check (but not Build or Build bin) on
Windows
(https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-install.html
https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-checksrc.html
).

However, I do not know what to do given the error output. For Install the message is

curl: (52) Empty reply from server


And for Check is just

* checking whether package 'OncoSimulR' can be installed ... ERROR
Installation failed.
See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00check.log'
for details.

curl: (52) Empty reply from server


I do not use curl in the code. Is this a problem fetching dependencies or a
problem caused by a package I depend on?


Thanks, 


R.
Ramon Diaz-Uriarte
# 
To partially answer myself, on looking more carefully, the INSTALL problem
seems to happen in the call to curl.exe (i.e., not in the R package
installation itself per se). It seems this failed

C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/OncoSimulR_2.99.94.tar.gz

even if the tar.gz is actually there. Can I assume this is probably a
transient error?



And if I understand correctly the CHECK error ("Installation failed.
See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for
details") it can also be traced to a curl problem?

Best,
On Tue, 11-May-2021, at 20:15:24, Ramon Diaz-Uriarte <rdiaz02 at gmail.com> wrote:

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Hervé Pagès
    

    

      
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Hi Ramon,

This looks like a communication problem between riesling1 and nebbiolo1. 
Hopefully this is something transient. Fingers crossed!

Cheers,
H.

        
On 11/05/2021 16:38, Ramon Diaz-Uriarte wrote:

            

      
      
      
    

        

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Ramon Diaz-Uriarte
    

    

      
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Hi Herv?,

Thanks! I'll keep my fingers crossed :-)

Best,

R.

        
On Wed, 12-May-2021, at 04:05:05, Herv? Pag?s <hpages.on.github at gmail.com> wrote: