Hi, My packages have been failing R CMD check on the Bioc server on Mac because of this error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so': dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so, 0x0006): symbol not found in flat namespace (_ZSTD_compress) Apparently it's a problem with the installation of the arrow package. It doesn't happen on Linux and Windows. What to do?
[Bioc-devel] Mac arrow installation problem causing R CMD check fail
3 messages · Dongyi Lu, Martin Grigorov, Jennifer Wokaty
Hi,
On Thu, 22 Aug 2024 at 18:12, Dongyi Lu <dl3764 at columbia.edu> wrote:
Hi, My packages have been failing R CMD check on the Bioc server on Mac because of this error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so': dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so,
Do you know why it looks for .so instead of .dylib ?
0x0006): symbol not found in flat namespace (_ZSTD_compress)
Apparently it's a problem with the installation of the arrow package. It
doesn't happen on Linux and Windows. What to do?
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Could you tell me what packages? You can follow up with me directly and I can look at the build machines. Jennifer Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Dongyi Lu <dl3764 at columbia.edu>
Sent: Thursday, August 22, 2024 11:12 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Mac arrow installation problem causing R CMD check fail
Sent: Thursday, August 22, 2024 11:12 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Mac arrow installation problem causing R CMD check fail
* This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. *
Hi,
My packages have been failing R CMD check on the Bioc server on Mac because
of this error:
unable to load shared object
'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so,
0x0006): symbol not found in flat namespace (_ZSTD_compress)
Apparently it's a problem with the installation of the arrow package. It
doesn't happen on Linux and Windows. What to do?
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel at r-project.org mailing list
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