Hi, We've been encountering a cstack related error on the build systems on random occasions (https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/ReactomeGSA/nebbiolo2-checksrc.html): Error: C stack usage 7970308 is too close to the limit I know, that the limit can be adapted using the "ulimit -s 16384" command before starting the R session. Unfortunately, in our case it seems to be caused by a call to the gplots::heatmap.2 function. Thanks a lot! Kind regards, Johannes
[Bioc-devel] Question about cstack usage error
2 messages · Johannes Griss, Vincent Carey
can you build a reprex for gplots? we are stretched very thin right now and i am sorry to say i don't see this as actionable in our group. On Tue, Feb 27, 2024 at 2:36?AM Johannes Griss <
johannes.griss at meduniwien.ac.at> wrote:
Hi, We've been encountering a cstack related error on the build systems on random occasions ( https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/ReactomeGSA/nebbiolo2-checksrc.html ): Error: C stack usage 7970308 is too close to the limit I know, that the limit can be adapted using the "ulimit -s 16384" command before starting the R session. Unfortunately, in our case it seems to be caused by a call to the gplots::heatmap.2 function. Thanks a lot! Kind regards, Johannes
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