Dear all, The build report for BASiCS currently includes a warning in tokay2 (but malbec2 and machv2 are ok). This seems to be an issue associated to the documentation of brewer.pal in RColorBrewer: file link 'brewer.pal' in package 'RColorBrewer' does not exist and so has been treated as a topic I can see that other packages have similar warnings in tokay2. Has anyone found a solution for it? Many thanks in advance, Best wishes, Cata The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.
[Bioc-devel] Warning in tokay2
3 messages · VALLEJOS MENESES Catalina, Shepherd, Lori, Martin Morgan
Please see this post: https://stat.ethz.ch/pipermail/bioc-devel/2019-April/014999.html Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of VALLEJOS MENESES Catalina <Catalina.vallejos at igmm.ed.ac.uk>
Sent: Tuesday, April 14, 2020 9:51 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Warning in tokay2
Sent: Tuesday, April 14, 2020 9:51 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Warning in tokay2
Dear all,
The build report for BASiCS currently includes a warning in tokay2 (but malbec2 and machv2 are ok). This seems to be an issue associated to the documentation of brewer.pal in RColorBrewer:
file link 'brewer.pal' in package 'RColorBrewer' does not exist and so has been treated as a topic
I can see that other packages have similar warnings in tokay2. Has anyone found a solution for it?
Many thanks in advance,
Best wishes,
Cata
The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.
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See the documentation at https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Cross_002dreferences -- you probably have something \link[foo]{bar}, which says that 'bar' is documented on a help page WITH A FILE NAME 'foo', but actually the file name is something else. The simplest solution is to write this as \link{bar} and let the help system resolve the location dynamically. The complicated and not-best-practice solution is to find out what the name of the file is, and use that instead of 'foo'. But the name of a help file sounds like internal package business that other packages shouldn't need to know about... Martin ?On 4/14/20, 9:51 AM, "Bioc-devel on behalf of VALLEJOS MENESES Catalina" <bioc-devel-bounces at r-project.org on behalf of Catalina.vallejos at igmm.ed.ac.uk> wrote: Dear all, The build report for BASiCS currently includes a warning in tokay2 (but malbec2 and machv2 are ok). This seems to be an issue associated to the documentation of brewer.pal in RColorBrewer: file link 'brewer.pal' in package 'RColorBrewer' does not exist and so has been treated as a topic I can see that other packages have similar warnings in tokay2. Has anyone found a solution for it? Many thanks in advance, Best wishes, Cata The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel