[Bioc-devel] Question about InteractionSet package

From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
To: "Ioannis Vardaxis" <ioannis.vardaxis at math.ntnu.no>
Cc: "bioc-devel" <bioc-devel at r-project.org>
Sent: Friday, October 21, 2016 10:44:26 AM
Subject: Re: [Bioc-devel] Question about InteractionSet package

You need to tell us the command that produced that error.

InteractionSet is a Bioconductor package, not a CRAN package. Maybe you tried to
install it with install.packages() instead of biocLite()?

See the "Installlation" section of

https://bioconductor.org/packages/release/bioc/html/InteractionSet.html

Dan


----- Original Message -----

From: "Ioannis Vardaxis" <ioannis.vardaxis at math.ntnu.no>
To: "bioc-devel" <bioc-devel at r-project.org>
Sent: Friday, October 21, 2016 7:07:30 AM
Subject: [Bioc-devel] Question about InteractionSet package

Hi,

I am currently developing a package which I want to submit to Bioconductor. I am
using the R-devel version. I am trying  to install the InteractionSet package
with no success. I get the following warnings:

Warning: unable to access index for repository
https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.4:
Package which is only available in source form, and may need compilation of
C/C++/Fortran:
 'InteractionSet'
Do you want to attempt to install these from sources?
y/n:

Even if I answer y, the package is not installed. Is there any possible solution
to the problem?


Best,
Ioannis
--
Ioannis Vardaxis
Stipendiat IMF
NTNU

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