Hi, Is it possible to install ghostscript in tokay2 for development package build? Yours Sincerely, Jianhong Ou Email: jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu> Bioinformatician II Department of Cell Biology Duke University School of Medicine Durham, NC, 27710 Confidentiality Notice: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential, proprietary and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender immediately and destroy or permanently delete all copies of the original message.
[Bioc-devel] Ask help to install gs tokay2 build/check
5 messages · Jianhong Ou, Ph.D., Kasper Daniel Hansen, Obenchain, Valerie
Perhaps explain why On Fri, Nov 2, 2018 at 8:19 AM Jianhong Ou, Ph.D. <jianhong.ou at duke.edu> wrote:
Hi,
Is it possible to install ghostscript in tokay2 for development package
build?
Yours Sincerely,
Jianhong Ou
Email: jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu>
Bioinformatician II
Department of Cell Biology
Duke University School of Medicine
Durham, NC, 27710
Confidentiality Notice:
This e-mail message, including any attachments, is for...{{dropped:17}}
My package motifStack import grImport which is depend on ghostscript. Jianhong. From: Kasper Daniel Hansen <kasperdanielhansen at gmail.com> Date: Friday, November 2, 2018 at 8:55 AM To: "Jianhong Ou, Ph.D." <jianhong.ou at duke.edu> Cc: bioc-devel <bioc-devel at r-project.org> Subject: Re: [Bioc-devel] Ask help to install gs tokay2 build/check Perhaps explain why
On Fri, Nov 2, 2018 at 8:19 AM Jianhong Ou, Ph.D. <jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu>> wrote:
Hi, Is it possible to install ghostscript in tokay2 for development package build? Yours Sincerely, Jianhong Ou Email: jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu><mailto:jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu>> Bioinformatician II Department of Cell Biology Duke University School of Medicine Durham, NC, 27710 Confidentiality Notice: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential, proprietary and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender immediately and destroy or permanently delete all copies of the original message. _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel<https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwMFaQ&c=imBPVzF25OnBgGmVOlcsiEgHoG1i6YHLR0Sj_gZ4adc&r=PXg851DHXyo-Gs3eMIfeo49gUXVh-JSZu_MZDDxGun8&m=7acEoZUHKeCHn9bWasV0gBajZyX-ZaGZXey3zRmd2hE&s=WdftAqySGsEO9HsOEwfY3PGrlstoSZBRAjU4b6Qp2uM&e=>
Hi Jianhong, Ghostscript is already installed on the builders. On the Nov 1 build report for Bioc 3.9, motifStack is clean on tokay2 (Windows) but failed on malbec2 (Linux). There were other packages that depended on grImports with similar errors on Linux - dagLogo and motifbreakR. I went on the Linux builder to investigate and was able to build and check motifStack with no problem. I also saw the build results for today (Nov 2) and motifStack is clean so I'm not sure what happened in the previous day's builds. The build report for today, Nov 2, should post within the next hour and motifStack should be green. Valerie
On 11/2/18 6:05 AM, Jianhong Ou, Ph.D. wrote:
My package motifStack import grImport which is depend on ghostscript.
Jianhong.
From: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Date: Friday, November 2, 2018 at 8:55 AM
To: "Jianhong Ou, Ph.D." <jianhong.ou at duke.edu>
Cc: bioc-devel <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Ask help to install gs tokay2 build/check
Perhaps explain why
On Fri, Nov 2, 2018 at 8:19 AM Jianhong Ou, Ph.D. <jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu>> wrote:
Hi,
Is it possible to install ghostscript in tokay2 for development package build?
Yours Sincerely,
Jianhong Ou
Email: jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu><mailto:jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu>>
Bioinformatician II
Department of Cell Biology
Duke University School of Medicine
Durham, NC, 27710
Confidentiality Notice:
This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential, proprietary and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender immediately and destroy or permanently delete all copies of the original message.
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Thank you all very much. Jianhong.
?On 11/2/18, 3:03 PM, "Obenchain, Valerie" <Valerie.Obenchain at RoswellPark.org> wrote:
Hi Jianhong,
Ghostscript is already installed on the builders.
On the Nov 1 build report for Bioc 3.9, motifStack is clean on tokay2
(Windows) but failed on malbec2 (Linux). There were other packages that
depended on grImports with similar errors on Linux - dagLogo and
motifbreakR.
I went on the Linux builder to investigate and was able to build and
check motifStack with no problem. I also saw the build results for today
(Nov 2) and motifStack is clean so I'm not sure what happened in the
previous day's builds.
The build report for today, Nov 2, should post within the next hour and
motifStack should be green.
Valerie
On 11/2/18 6:05 AM, Jianhong Ou, Ph.D. wrote:
> My package motifStack import grImport which is depend on ghostscript.
>
> Jianhong.
>
> From: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
> Date: Friday, November 2, 2018 at 8:55 AM
> To: "Jianhong Ou, Ph.D." <jianhong.ou at duke.edu>
> Cc: bioc-devel <bioc-devel at r-project.org>
> Subject: Re: [Bioc-devel] Ask help to install gs tokay2 build/check
>
> Perhaps explain why
>
> On Fri, Nov 2, 2018 at 8:19 AM Jianhong Ou, Ph.D. <jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu>> wrote:
> Hi,
>
> Is it possible to install ghostscript in tokay2 for development package build?
>
> Yours Sincerely,
>
> Jianhong Ou
>
> Email: jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu><mailto:jianhong.ou at duke.edu<mailto:jianhong.ou at duke.edu>>
> Bioinformatician II
> Department of Cell Biology
> Duke University School of Medicine
> Durham, NC, 27710
>
> Confidentiality Notice:
> This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential, proprietary and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender immediately and destroy or permanently delete all copies of the original message.
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
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