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[Bioc-devel] build errors in bioconductor package

2 messages · Hillary Koch, Martin Morgan

Hillary Koch
# 
Hi,

I am trying to make updates to my package on bioconductor (powerTCR). I
thought originally that the changes weren't being pushed because maybe I
had synced with the bioconductor git repo incorrectly. Now I see that it is
synced propoerly, but there is some sort of build error occurring:

"001E# service=git-upload-pack

00000041ERR FATAL: unknown git/gitolite command: 'packages/powerTCR'
FATAL: unknown git/gitolite command: 'packages/powerTCR'
001E# service=git-upload-pack
0041ERR FATAL: unknown git/gitolite command: 'packages/powerTCR'"

I am not sure what to do next as I don't know what this error is. Any
advice is welcome.

Thanks,

Hillary
Martin Morgan
# 
I'd guess that your remote is incorrect; it should use ssh, and the 
separation between the host 'git.bioconductor.org' and repository path 
'packages/powerTCR' should be a colon, e.g.,

powerTCR master$ git remote -v
origin	git at git.bioconductor.org:packages/powerTCR (fetch)
origin	git at git.bioconductor.org:packages/powerTCR (push)

This could be corrected in various ways, one is

   git remote remove origin
   git remote add origin git at git.bioconductor.org:packages/powerTCR

Martin
On 09/09/2018 12:08 PM, Hillary Koch wrote: