[Bioc-devel] Updated Deprecated Package List for Bioc 3.7 - Bioc-devel

Sat, Mar 3, 2018 2:14 PM #

Hi Ludwig,


Were you still interested in taking over maintainership of ToPaSeq?  We have switched permission and you should have access now.  If you are no longer interested please let us know.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Ludwig Geistlinger <Ludwig.Geistlinger at sph.cuny.edu>
Sent: Friday, December 15, 2017 1:05:16 PM
To: Shepherd, Lori; Martin Morgan
Subject: Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

Hi Lori,

I would be willing to take over maintenance of

ToPASeq

in case maintainers remain unresponsive.

Best,
Ludwig

--
Dr. Ludwig Geistlinger
CUNY School of Public Health

________________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Shepherd, Lori <Lori.Shepherd at RoswellPark.org>
Sent: Friday, December 15, 2017 9:29 AM
To: Martin Morgan
Subject: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly.

The current list of deprecated packages is as follows:

Maintainer requested deprecation:

Software Package:
ontoCAT

Experiment Data Package:
RnaSeqTutorial
cheung2010



Unresponsive/not-maintained packages:

Software:
GMRP
MBttest
OperaMate
ToPASeq


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
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Ludwig Geistlinger

Sat, Mar 3, 2018 2:51 PM #

Hi Lori,


Yes I would take over maintenance.

Anything particular that I need to take care of?


Otherwise I would just follow:


https://bioconductor.org/developers/how-to/git/maintain-github-bioc/


to accordingly set this up.


Thanks,

Ludwig


--
Dr. Ludwig Geistlinger
CUNY School of Public Health

From: Shepherd, Lori <Lori.Shepherd at RoswellPark.org>
Sent: Saturday, March 3, 2018 5:14 PM
To: Ludwig Geistlinger; Martin Morgan
Subject: Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

Hi Ludwig,


Were you still interested in taking over maintainership of ToPaSeq?  We have switched permission and you should have access now.  If you are no longer interested please let us know.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Ludwig Geistlinger <Ludwig.Geistlinger at sph.cuny.edu>
Sent: Friday, December 15, 2017 1:05:16 PM
To: Shepherd, Lori; Martin Morgan
Subject: Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

Hi Lori,

I would be willing to take over maintenance of

ToPASeq

in case maintainers remain unresponsive.

Best,
Ludwig

--
Dr. Ludwig Geistlinger
CUNY School of Public Health

________________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Shepherd, Lori <Lori.Shepherd at RoswellPark.org>
Sent: Friday, December 15, 2017 9:29 AM
To: Martin Morgan
Subject: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly.

The current list of deprecated packages is as follows:

Maintainer requested deprecation:

Software Package:
ontoCAT

Experiment Data Package:
RnaSeqTutorial
cheung2010



Unresponsive/not-maintained packages:

Software:
GMRP
MBttest
OperaMate
ToPASeq


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel<https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwMFAg&c=mRWFL96tuqj9V0Jjj4h40ddo0XsmttALwKjAEOCyUjY&r=OdfcI7SrMMnS3DAUJULIgzR9ZFOeXSyzUMNqMKXj4yE&m=U_m_leinYsy4QmdwhzgtnqkLI0Nyqx3hADyGLrc9Qs0&s=MI8Wx4E5bER4kpsrf72qXRTElrE8aW8eFJl5WkhqkxY&e=>

This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.

Shepherd, Lori

Sun, Mar 4, 2018 4:54 PM #

Yes. You would probably want to make your own github repository to keep track of changes with the current version that is on our git.bioconductor.org server.

We have already synced the repository access with the id  l.geistlinger  and the associated key - so you should already have read and write access to the git server and don't have to submit an additional key - but you can if you like.


Cheers,



Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Ludwig Geistlinger <Ludwig.Geistlinger at sph.cuny.edu>
Sent: Saturday, March 3, 2018 5:51:10 PM
To: Shepherd, Lori; Martin Morgan
Subject: Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

Hi Lori,


Yes I would take over maintenance.

Anything particular that I need to take care of?


Otherwise I would just follow:


https://bioconductor.org/developers/how-to/git/maintain-github-bioc/


to accordingly set this up.


Thanks,

Ludwig


--
Dr. Ludwig Geistlinger
CUNY School of Public Health
________________________________
From: Shepherd, Lori <Lori.Shepherd at RoswellPark.org>
Sent: Saturday, March 3, 2018 5:14 PM
To: Ludwig Geistlinger; Martin Morgan
Subject: Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7


Hi Ludwig,


Were you still interested in taking over maintainership of ToPaSeq?  We have switched permission and you should have access now.  If you are no longer interested please let us know.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Ludwig Geistlinger <Ludwig.Geistlinger at sph.cuny.edu>
Sent: Friday, December 15, 2017 1:05:16 PM
To: Shepherd, Lori; Martin Morgan
Subject: Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

Hi Lori,

I would be willing to take over maintenance of

ToPASeq

in case maintainers remain unresponsive.

Best,
Ludwig

--
Dr. Ludwig Geistlinger
CUNY School of Public Health

________________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Shepherd, Lori <Lori.Shepherd at RoswellPark.org>
Sent: Friday, December 15, 2017 9:29 AM
To: Martin Morgan
Subject: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly.

The current list of deprecated packages is as follows:

Maintainer requested deprecation:

Software Package:
ontoCAT

Experiment Data Package:
RnaSeqTutorial
cheung2010



Unresponsive/not-maintained packages:

Software:
GMRP
MBttest
OperaMate
ToPASeq


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel<https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwMFAg&c=mRWFL96tuqj9V0Jjj4h40ddo0XsmttALwKjAEOCyUjY&r=OdfcI7SrMMnS3DAUJULIgzR9ZFOeXSyzUMNqMKXj4yE&m=U_m_leinYsy4QmdwhzgtnqkLI0Nyqx3hADyGLrc9Qs0&s=MI8Wx4E5bER4kpsrf72qXRTElrE8aW8eFJl5WkhqkxY&e=>

This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.


This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.