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[Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)

6 messages · Enio Gjerga, Turaga, Nitesh

Original
Enio Gjerga
# 
Hello,

I am Enio Gjerga and I am the maintainer of the CNORfeeder and the CNORode
package, a role which I got recently. I am facing trouble trying to access
the source packages for then later syncing it with a Github repository and
do a few necessary updates. I try first to obtain developer access through
the "git clone git at git.bioconductor.org:packages/CNORfeeder" command, but
then I get the error "Permission denied (publickey). fatal: Could not read
from remote repository.". I already have the GitHub id and the ssh-rsa key
on my user profile in https://git.bioconductor.org/BiocCredentials, but
apparently I still can't get the access to the package and not sure what
might be doing wrong.

Any help about this would be much appreciated.

Cheers,

Enio
Turaga, Nitesh
# 
Try adding another key. If that doesn't work, show us your git set up.

http://bioconductor.org/developers/how-to/git/faq/

#13 and #14

Best,

Nitesh 


?On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga" <bioc-devel-bounces at r-project.org on behalf of enio.gjerga at gmail.com> wrote:

    Hello,
    
    I am Enio Gjerga and I am the maintainer of the CNORfeeder and the CNORode
    package, a role which I got recently. I am facing trouble trying to access
    the source packages for then later syncing it with a Github repository and
    do a few necessary updates. I try first to obtain developer access through
    the "git clone git at git.bioconductor.org:packages/CNORfeeder" command, but
    then I get the error "Permission denied (publickey). fatal: Could not read
    from remote repository.". I already have the GitHub id and the ssh-rsa key
    on my user profile in https://git.bioconductor.org/BiocCredentials, but
    apparently I still can't get the access to the package and not sure what
    might be doing wrong.
    
    Any help about this would be much appreciated.
    
    Cheers,
    
    Enio
    
    -- 
    Enio GJERGA
    PhD student
    JRC-COMBINE RWTH Aachen
    Tel : +4917685132057
    
    
    _______________________________________________
    Bioc-devel at r-project.org mailing list
    https://stat.ethz.ch/mailman/listinfo/bioc-devel
    



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Enio Gjerga
# 
Hello,

Thank you very much for your reply. I have added a new key on my
BiocCredentials and on Github, however, I am afraid that the same issue
still persists. If I try to check whether I have access to the package
(using the "ssh -T git at git.bioconductor.org" command) or clone it locally
(through "git clone git at git.bioconductor.org:packages/CNORfeeder" command)
I still unfortunately get the same "permission denied (public key)" error.

How can I check for my git set up?

Sorry again, but quiet new on this.

Cheers,

On Fri, 27 Mar 2020 at 13:38, Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>
wrote:

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Turaga, Nitesh
    

    

      
      #
    

  


  

      
As given in #14 of the FAQ, please send me

	git remote -v

            

      
      
      
    

        

      
      
    

        
This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.

  
  


  


      

    

    

      
      

        


  

        

      Enio Gjerga
    

    

      
      #
    

  


  

      
Hi,

Thank you for your reply. So according to #14:

1. I use "git remote -v" and then I get the following:

origin https://github.com/saezlab/CNOv2.git (fetch)

origin https://github.com/saezlab/CNOv2.git (push)

upstream git at git.bioconductor.org:packages/CNORfeeder.git (fetch)

upstream git at git.bioconductor.org:packages/CNORfeeder.git (push)

2. Then I check if I have access to the git serve by using "ssh -T
git at git.bioconductor.org" after which I get:

Permission denied (publickey).

3. According to #15, I have generated another key under the name
id_rsa_bioc through the commands:

mkdir -p ~/.ssh && chmod 700 ~/.ssh

touch ~/.ssh/config

chmod 600 ~/.ssh/config

But it doesn't seem to generate anny ssh/config directory so was wondering
how can I add the:

host git.bioconductor.org
     HostName git.bioconductor.org
     IdentityFile ~/.ssh/id_rsa_bioconductor
     User git

The public key of id_rsa_bioc is already added on my profile in
BiocCredentials and also on my GitHub account.

As always any help is very much appreciated.

Cheers,
Enio

On Fri, 27 Mar 2020 at 16:03, Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>
wrote:

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Turaga, Nitesh
    

    

      
      #
    

  


  

      
Ok, can you also show my the result of

	ssh - T git at git.bioconductor.org | grep CNORfeeder

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        
This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.