Hi All, I am using both part of edgeR and NOISeq functions in a new package and got the following warning when conducting package check: Warning: replacing previous import edgeR::rpkm by NOISeq::rpkm when loading ComSeq ComSeq is the name of my new package and I used the following import statement in NAMESPACE: import(edgeR, DESeq2, EBSeq, samr, NOISeq) I tried to add "import(NOISeq, rpkm)", but still get the same warning. Any help is highly appreciated. Kind regards, Dongmei
[Bioc-devel] how to avoid the warning of replacing previous import edgeR::rpkm by NOISeq::rpkm when loading ComSeq
3 messages · Martin Morgan, Li, Dongmei
On 06/22/2017 03:10 PM, Li, Dongmei wrote:
Hi All, I am using both part of edgeR and NOISeq functions in a new package and got the following warning when conducting package check: Warning: replacing previous import edgeR::rpkm by NOISeq::rpkm when loading ComSeq ComSeq is the name of my new package and I used the following import statement in NAMESPACE: import(edgeR, DESeq2, EBSeq, samr, NOISeq) I tried to add "import(NOISeq, rpkm)", but still get the same warning. Any help is highly appreciated.
see importFrom() and import(except=) in Writing R Extensisons section 1.5.1. https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Specifying-imports-and-exports Martin
Kind regards, Dongmei [[alternative HTML version deleted]]
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Hi Martin, Thanks so much for all your help! Best, Dongmei
On 6/22/17, 4:05 PM, "Martin Morgan" <martin.morgan at roswellpark.org> wrote:
On 06/22/2017 03:10 PM, Li, Dongmei wrote:
Hi All, I am using both part of edgeR and NOISeq functions in a new package and got the following warning when conducting package check: Warning: replacing previous import edgeR::rpkm by NOISeq::rpkm when loading ComSeq ComSeq is the name of my new package and I used the following import statement in NAMESPACE: import(edgeR, DESeq2, EBSeq, samr, NOISeq) I tried to add "import(NOISeq, rpkm)", but still get the same warning. Any help is highly appreciated.
see importFrom() and import(except=) in Writing R Extensisons section 1.5.1. https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_ doc_manuals_r-2Drelease_R-2Dexts.html-23Specifying-2Dimports-2Dand-2Dexpor ts&d=DQICaQ&c=4sF48jRmVAe_CH-k9mXYXEGfSnM3bY53YSKuLUQRxhA&r=azjhQW59umxfk6 7jsIXeg7AS2ugqKLkykGYJFRwaLto&m=s-ReclUo_mEHQVPAfT1cjSIHHiJwPDdKOcV8tjryoC M&s=6vBWeWQNB1YfTwHYzDSsdA08KB6zK5aLb4toAIOHrVc&e= Martin
Kind regards, Dongmei [[alternative HTML version deleted]]
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