Dear Community, I submitted a recent version of the rmspc package following an update we made to package. I followed the guidelines specified when updating a bioconductor package. However, I didn't get an automatic email when I pushed the updated package to Bioconductor and I don't see those changes reflected in the latest built report ( I'm getting a Build Error in all the servers . I did bump to a new version of the package. Any help would be appreciated! Thank you for your help! Best, *Meriem BAHDA*
[Bioc-devel] New version of rmspc - error
9 messages · Shepherd, Lori, Martin Grigorov, Andres Wokaty +1 more
After a package is submitted to Bioconductor it runs on the daily build and not on demand builds that occurred during the submission process. I'm not sure which build report you are looking but the devel is still ERRORing across all platforms with the latest version that is pushed to git.bioconductor.org. https://bioconductor.org/checkResults/devel/bioc-LATEST/rmspc/ The version bump is included. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Meriem Bahda <meriembahda at gmail.com>
Sent: Thursday, March 13, 2025 12:13 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] New version of rmspc - error
Sent: Thursday, March 13, 2025 12:13 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] New version of rmspc - error
Dear Community,
I submitted a recent version of the rmspc package following an update we
made to package. I followed the guidelines specified when updating a
bioconductor package.
However, I didn't get an automatic email when I pushed the updated package
to Bioconductor and I don't see those changes reflected in the latest built
report ( I'm getting a Build Error in all the servers . I did bump to a new
version of the package.
Any help would be appreciated!
Thank you for your help!
Best,
*Meriem BAHDA*
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel at r-project.org mailing list
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3 days later
Hi Lori, I see that the error in all servers is *System command 'dotnet' failed, *which means this is an issue related to .NET. Our team mistakenly updated the package to use .NET 9.0 instead of NET 8.0 as instructed by the bioconductor team, which I think is causing the issue. Do you maybe have plans to update the .NET used in the servers to .NET 9.0 ? If not, I can instruct the team to update the software to downgrade to .NET 8.0. Please let me know what works best for you! Thank you very much for your help! Best, Meriem Le jeu. 13 mars 2025 ? 08:46, Kern, Lori <Lori.Shepherd at roswellpark.org> a ?crit :
After a package is submitted to Bioconductor it runs on the daily build and not on demand builds that occurred during the submission process. I'm not sure which build report you are looking but the devel is still ERRORing across all platforms with the latest version that is pushed to git.bioconductor.org. https://bioconductor.org/checkResults/devel/bioc-LATEST/rmspc/ The version bump is included. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Meriem Bahda <meriembahda at gmail.com> *Sent:* Thursday, March 13, 2025 12:13 AM *To:* bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* [Bioc-devel] New version of rmspc - error Dear Community, I submitted a recent version of the rmspc package following an update we made to package. I followed the guidelines specified when updating a bioconductor package. However, I didn't get an automatic email when I pushed the updated package to Bioconductor and I don't see those changes reflected in the latest built report ( I'm getting a Build Error in all the servers . I did bump to a new version of the package. Any help would be appreciated! Thank you for your help! Best, *Meriem BAHDA* [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1_zryKUHgwL53TkQcwsOkSrKAcM_rw2Fdi6UNDI0Zn_AA3OT0F4bhAOrmmCVaAItokZptdNT47kMoIJSZttyAwViXv-190cVXDOawmdTfIouPP0jAEwjq8eDcRbdj68oVB6CHXEA45lfKxwFJxscO1u141T8PKSZGHsglXlrjhAajnw2T4QZkM3owEdSoDpHbRnhxkKOldapzlSLs0pnzoheN9HB6-m1OG-wIbNNyNGPURAkZk9Thbpx6NNUThSMjOaxw2BTYH_LiBS6hnFAWutqDnh8FHTh0kz-fk_unaF2FZYrMBNx45Bdr1TzSt2o2/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
*Meriem BAHDA* [[alternative HTML version deleted]]
Hi, I've installed .NET 9 at kunpeng2 and taishan machines. The next builds should be fine/better ! Regards, Martin
On Mon, Mar 17, 2025 at 4:45?AM Meriem Bahda <meriembahda at gmail.com> wrote:
Hi Lori, I see that the error in all servers is *System command 'dotnet' failed, *which means this is an issue related to .NET. Our team mistakenly updated the package to use .NET 9.0 instead of NET 8.0 as instructed by the bioconductor team, which I think is causing the issue. Do you maybe have plans to update the .NET used in the servers to .NET 9.0 ? If not, I can instruct the team to update the software to downgrade to .NET 8.0. Please let me know what works best for you! Thank you very much for your help! Best, Meriem Le jeu. 13 mars 2025 ? 08:46, Kern, Lori <Lori.Shepherd at roswellpark.org> a ?crit :
After a package is submitted to Bioconductor it runs on the daily build and not on demand builds that occurred during the submission process. I'm not sure which build report you are looking but the devel is still ERRORing across all platforms with the latest version that is pushed to git.bioconductor.org. https://bioconductor.org/checkResults/devel/bioc-LATEST/rmspc/ The version bump is included. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
Meriem
Bahda <meriembahda at gmail.com> *Sent:* Thursday, March 13, 2025 12:13 AM *To:* bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* [Bioc-devel] New version of rmspc - error Dear Community, I submitted a recent version of the rmspc package following an update we made to package. I followed the guidelines specified when updating a bioconductor package. However, I didn't get an automatic email when I pushed the updated
package
to Bioconductor and I don't see those changes reflected in the latest
built
report ( I'm getting a Build Error in all the servers . I did bump to a
new
version of the package.
Any help would be appreciated!
Thank you for your help!
Best,
*Meriem BAHDA*
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
--
*Meriem BAHDA*
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
1 day later
Hi Meriem, I can try to update the devel builders with dotnet 9.x later this week. I'll follow up when complete or if there are issues. Andres Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Meriem Bahda <meriembahda at gmail.com>
Sent: Sunday, March 16, 2025 10:44 PM
To: Kern, Lori <Lori.Shepherd at roswellpark.org>
Cc: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] New version of rmspc - error
Sent: Sunday, March 16, 2025 10:44 PM
To: Kern, Lori <Lori.Shepherd at roswellpark.org>
Cc: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] New version of rmspc - error
* This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * Hi Lori, I see that the error in all servers is *System command 'dotnet' failed, *which means this is an issue related to .NET. Our team mistakenly updated the package to use .NET 9.0 instead of NET 8.0 as instructed by the bioconductor team, which I think is causing the issue. Do you maybe have plans to update the .NET used in the servers to .NET 9.0 ? If not, I can instruct the team to update the software to downgrade to .NET 8.0. Please let me know what works best for you! Thank you very much for your help! Best, Meriem Le jeu. 13 mars 2025 ? 08:46, Kern, Lori <Lori.Shepherd at roswellpark.org> a ?crit : > After a package is submitted to Bioconductor it runs on the daily build > and not on demand builds that occurred during the submission process. > I'm not sure which build report you are looking but the devel is still > ERRORing across all platforms with the latest version that is pushed to > git.bioconductor.org. > > https://urldefense.com/v3/__https://bioconductor.org/checkResults/devel/bioc-LATEST/rmspc/__;!!LRXxDv2l!Szp5Ml3D7Xc0R_jdK3lEePioXn1UcWl8AbY-fed4ZEdmmepB0ZG9MMhN5hxEPtIBLi9f59R9kaS0SBGIvn0JMaDYiZPkKd4$ > > The version bump is included. > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Meriem > Bahda <meriembahda at gmail.com> > *Sent:* Thursday, March 13, 2025 12:13 AM > *To:* bioc-devel at r-project.org <bioc-devel at r-project.org> > *Subject:* [Bioc-devel] New version of rmspc - error > > Dear Community, > > I submitted a recent version of the rmspc package following an update we > made to package. I followed the guidelines specified when updating a > bioconductor package. > > However, I didn't get an automatic email when I pushed the updated package > to Bioconductor and I don't see those changes reflected in the latest built > report ( I'm getting a Build Error in all the servers . I did bump to a new > version of the package. > > Any help would be appreciated! > > Thank you for your help! > > Best, > > *Meriem BAHDA* > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel at r-project.org mailing list > > https://urldefense.com/v3/__https://secure-web.cisco.com/1_zryKUHgwL53TkQcwsOkSrKAcM_rw2Fdi6UNDI0Zn_AA3OT0F4bhAOrmmCVaAItokZptdNT47kMoIJSZttyAwViXv-190cVXDOawmdTfIouPP0jAEwjq8eDcRbdj68oVB6CHXEA45lfKxwFJxscO1u141T8PKSZGHsglXlrjhAajnw2T4QZkM3owEdSoDpHbRnhxkKOldapzlSLs0pnzoheN9HB6-m1OG-wIbNNyNGPURAkZk9Thbpx6NNUThSMjOaxw2BTYH_LiBS6hnFAWutqDnh8FHTh0kz-fk_unaF2FZYrMBNx45Bdr1TzSt2o2/https*3A*2F*2Fstat.ethz.ch*2Fmailman*2Flistinfo*2Fbioc-devel__;JSUlJSUl!!LRXxDv2l!Szp5Ml3D7Xc0R_jdK3lEePioXn1UcWl8AbY-fed4ZEdmmepB0ZG9MMhN5hxEPtIBLi9f59R9kaS0SBGIvn0JMaDYXo7CC9g$ > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- *Meriem BAHDA* [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!LRXxDv2l!Szp5Ml3D7Xc0R_jdK3lEePioXn1UcWl8AbY-fed4ZEdmmepB0ZG9MMhN5hxEPtIBLi9f59R9kaS0SBGIvn0JMaDYO00qDAw$
Hi Martin, Thank you very much for your quick response! I see that the package was successfully installed and built on kunpeng2, which means the issue for the error in the other servers was indeed the difference in .NET version. I appreciate your help! Best, Meriem *Meriem BAHDA* On Mon, Mar 17, 2025, 9:24?a.m. Martin Grigorov <mgrigorov at apache.org> wrote:
Hi, I've installed .NET 9 at kunpeng2 and taishan machines. The next builds should be fine/better ! Regards, Martin On Mon, Mar 17, 2025 at 4:45?AM Meriem Bahda <meriembahda at gmail.com> wrote:
Hi Lori, I see that the error in all servers is *System command 'dotnet' failed, *which means this is an issue related to .NET. Our team mistakenly updated the package to use .NET 9.0 instead of NET 8.0 as instructed by the bioconductor team, which I think is causing the issue. Do you maybe have plans to update the .NET used in the servers to .NET 9.0 ? If not, I can instruct the team to update the software to downgrade to .NET 8.0. Please let me know what works best for you! Thank you very much for your help! Best, Meriem Le jeu. 13 mars 2025 ? 08:46, Kern, Lori <Lori.Shepherd at roswellpark.org> a ?crit :
After a package is submitted to Bioconductor it runs on the daily build and not on demand builds that occurred during the submission process. I'm not sure which build report you are looking but the devel is still ERRORing across all platforms with the latest version that is pushed to git.bioconductor.org. https://bioconductor.org/checkResults/devel/bioc-LATEST/rmspc/ The version bump is included. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
Meriem
Bahda <meriembahda at gmail.com> *Sent:* Thursday, March 13, 2025 12:13 AM *To:* bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* [Bioc-devel] New version of rmspc - error Dear Community, I submitted a recent version of the rmspc package following an update we made to package. I followed the guidelines specified when updating a bioconductor package. However, I didn't get an automatic email when I pushed the updated
package
to Bioconductor and I don't see those changes reflected in the latest
built
report ( I'm getting a Build Error in all the servers . I did bump to a
new
version of the package.
Any help would be appreciated!
Thank you for your help!
Best,
*Meriem BAHDA*
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee
or
agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
--
*Meriem BAHDA*
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Hi Andres, Thank you so much for looking into this, that would be great! Can I go ahead and update the documentation of rmspc to reflect the new change, i.e, that we're using .NET 09? Thank you! Best, Meriem *Meriem BAHDA* On Tue, Mar 18, 2025, 11:00?a.m. Andres Wokaty <Andres.Wokaty at sph.cuny.edu> wrote:
Hi Meriem, I can try to update the devel builders with dotnet 9.x later this week. I'll follow up when complete or if there are issues. Andres Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Meriem Bahda <meriembahda at gmail.com> *Sent:* Sunday, March 16, 2025 10:44 PM *To:* Kern, Lori <Lori.Shepherd at roswellpark.org> *Cc:* bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* Re: [Bioc-devel] New version of rmspc - error * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * Hi Lori, I see that the error in all servers is *System command 'dotnet' failed, *which means this is an issue related to .NET. Our team mistakenly updated the package to use .NET 9.0 instead of NET 8.0 as instructed by the bioconductor team, which I think is causing the issue. Do you maybe have plans to update the .NET used in the servers to .NET 9.0 ? If not, I can instruct the team to update the software to downgrade to .NET 8.0. Please let me know what works best for you! Thank you very much for your help! Best, Meriem Le jeu. 13 mars 2025 ? 08:46, Kern, Lori <Lori.Shepherd at roswellpark.org> a ?crit :
After a package is submitted to Bioconductor it runs on the daily build and not on demand builds that occurred during the submission process. I'm not sure which build report you are looking but the devel is still ERRORing across all platforms with the latest version that is pushed to git.bioconductor.org.
The version bump is included. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
Meriem
Bahda <meriembahda at gmail.com> *Sent:* Thursday, March 13, 2025 12:13 AM *To:* bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* [Bioc-devel] New version of rmspc - error Dear Community, I submitted a recent version of the rmspc package following an update we made to package. I followed the guidelines specified when updating a bioconductor package. However, I didn't get an automatic email when I pushed the updated
package
to Bioconductor and I don't see those changes reflected in the latest
built
report ( I'm getting a Build Error in all the servers . I did bump to a
new
version of the package.
Any help would be appreciated!
Thank you for your help!
Best,
*Meriem BAHDA*
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
--
*Meriem BAHDA*
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!LRXxDv2l!Szp5Ml3D7Xc0R_jdK3lEePioXn1UcWl8AbY-fed4ZEdmmepB0ZG9MMhN5hxEPtIBLi9f59R9kaS0SBGIvn0JMaDYO00qDAw$
2 days later
Hi Meriem, I've installed .NET 9.x on our devel builders. Please update rmspc's documentation. Have a great weekend. Andres Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team
From: Meriem Bahda <meriembahda at gmail.com>
Sent: Tuesday, March 18, 2025 11:19 PM
To: Andres Wokaty <Andres.Wokaty at sph.cuny.edu>
Cc: Kern, Lori <Lori.Shepherd at roswellpark.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] New version of rmspc - error
Sent: Tuesday, March 18, 2025 11:19 PM
To: Andres Wokaty <Andres.Wokaty at sph.cuny.edu>
Cc: Kern, Lori <Lori.Shepherd at roswellpark.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] New version of rmspc - error
Hi Andres, Thank you so much for looking into this, that would be great! Can I go ahead and update the documentation of rmspc to reflect the new change, i.e, that we're using .NET 09? Thank you! Best, Meriem Meriem BAHDA On Tue, Mar 18, 2025, 11:00?a.m. Andres Wokaty <Andres.Wokaty at sph.cuny.edu<mailto:Andres.Wokaty at sph.cuny.edu>> wrote: Hi Meriem, I can try to update the devel builders with dotnet 9.x later this week. I'll follow up when complete or if there are issues. Andres Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org<mailto:bioc-devel-bounces at r-project.org>> on behalf of Meriem Bahda <meriembahda at gmail.com<mailto:meriembahda at gmail.com>> Sent: Sunday, March 16, 2025 10:44 PM To: Kern, Lori <Lori.Shepherd at roswellpark.org<mailto:Lori.Shepherd at roswellpark.org>> Cc: bioc-devel at r-project.org<mailto:bioc-devel at r-project.org> <bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>> Subject: Re: [Bioc-devel] New version of rmspc - error * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * Hi Lori, I see that the error in all servers is *System command 'dotnet' failed, *which means this is an issue related to .NET. Our team mistakenly updated the package to use .NET 9.0 instead of NET 8.0 as instructed by the bioconductor team, which I think is causing the issue. Do you maybe have plans to update the .NET used in the servers to .NET 9.0 ? If not, I can instruct the team to update the software to downgrade to .NET 8.0. Please let me know what works best for you! Thank you very much for your help! Best, Meriem Le jeu. 13 mars 2025 ? 08:46, Kern, Lori <Lori.Shepherd at roswellpark.org<mailto:Lori.Shepherd at roswellpark.org>> a ?crit : > After a package is submitted to Bioconductor it runs on the daily build > and not on demand builds that occurred during the submission process. > I'm not sure which build report you are looking but the devel is still > ERRORing across all platforms with the latest version that is pushed to > git.bioconductor.org<https://urldefense.com/v3/__http://git.bioconductor.org__;!!LRXxDv2l!UTYU5ANolGNUVVg-_T-F3uHUlqZDtTaDg6vszlmX-BVcLTAX1rrCpc4TQXdIKijeSs0-pvU_V_EXaQam40X5Xr13NRLK$>. > > https://urldefense.com/v3/__https://bioconductor.org/checkResults/devel/bioc-LATEST/rmspc/__;!!LRXxDv2l!Szp5Ml3D7Xc0R_jdK3lEePioXn1UcWl8AbY-fed4ZEdmmepB0ZG9MMhN5hxEPtIBLi9f59R9kaS0SBGIvn0JMaDYiZPkKd4$ > > The version bump is included. > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-bounces at r-project.org<mailto:bioc-devel-bounces at r-project.org>> on behalf of Meriem > Bahda <meriembahda at gmail.com<mailto:meriembahda at gmail.com>> > *Sent:* Thursday, March 13, 2025 12:13 AM > *To:* bioc-devel at r-project.org<mailto:bioc-devel at r-project.org> <bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>> > *Subject:* [Bioc-devel] New version of rmspc - error > > Dear Community, > > I submitted a recent version of the rmspc package following an update we > made to package. I followed the guidelines specified when updating a > bioconductor package. > > However, I didn't get an automatic email when I pushed the updated package > to Bioconductor and I don't see those changes reflected in the latest built > report ( I'm getting a Build Error in all the servers . I did bump to a new > version of the package. > > Any help would be appreciated! > > Thank you for your help! > > Best, > > *Meriem BAHDA* > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list > > https://urldefense.com/v3/__https://secure-web.cisco.com/1_zryKUHgwL53TkQcwsOkSrKAcM_rw2Fdi6UNDI0Zn_AA3OT0F4bhAOrmmCVaAItokZptdNT47kMoIJSZttyAwViXv-190cVXDOawmdTfIouPP0jAEwjq8eDcRbdj68oVB6CHXEA45lfKxwFJxscO1u141T8PKSZGHsglXlrjhAajnw2T4QZkM3owEdSoDpHbRnhxkKOldapzlSLs0pnzoheN9HB6-m1OG-wIbNNyNGPURAkZk9Thbpx6NNUThSMjOaxw2BTYH_LiBS6hnFAWutqDnh8FHTh0kz-fk_unaF2FZYrMBNx45Bdr1TzSt2o2/https*3A*2F*2Fstat.ethz.ch*2Fmailman*2Flistinfo*2Fbioc-devel__;JSUlJSUl!!LRXxDv2l!Szp5Ml3D7Xc0R_jdK3lEePioXn1UcWl8AbY-fed4ZEdmmepB0ZG9MMhN5hxEPtIBLi9f59R9kaS0SBGIvn0JMaDYXo7CC9g$ > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- *Meriem BAHDA* [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!LRXxDv2l!Szp5Ml3D7Xc0R_jdK3lEePioXn1UcWl8AbY-fed4ZEdmmepB0ZG9MMhN5hxEPtIBLi9f59R9kaS0SBGIvn0JMaDYO00qDAw$
2 days later
Hi Andres, Thank you very much! I've updated rmspc's documentation, please let me know if there are any issues :) Thank you for your support and patience! Best, Meriem Le ven. 21 mars 2025 ? 12:58, Andres Wokaty <Andres.Wokaty at sph.cuny.edu> a ?crit :
Hi Meriem, I've installed .NET 9.x on our devel builders. Please update rmspc's documentation. Have a great weekend. Andres Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ------------------------------ *From:* Meriem Bahda <meriembahda at gmail.com> *Sent:* Tuesday, March 18, 2025 11:19 PM *To:* Andres Wokaty <Andres.Wokaty at sph.cuny.edu> *Cc:* Kern, Lori <Lori.Shepherd at roswellpark.org>; bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* Re: [Bioc-devel] New version of rmspc - error Hi Andres, Thank you so much for looking into this, that would be great! Can I go ahead and update the documentation of rmspc to reflect the new change, i.e, that we're using .NET 09? Thank you! Best, Meriem *Meriem BAHDA * On Tue, Mar 18, 2025, 11:00?a.m. Andres Wokaty <Andres.Wokaty at sph.cuny.edu> wrote: Hi Meriem, I can try to update the devel builders with dotnet 9.x later this week. I'll follow up when complete or if there are issues. Andres Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Meriem Bahda <meriembahda at gmail.com> *Sent:* Sunday, March 16, 2025 10:44 PM *To:* Kern, Lori <Lori.Shepherd at roswellpark.org> *Cc:* bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* Re: [Bioc-devel] New version of rmspc - error * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * Hi Lori, I see that the error in all servers is *System command 'dotnet' failed, *which means this is an issue related to .NET. Our team mistakenly updated the package to use .NET 9.0 instead of NET 8.0 as instructed by the bioconductor team, which I think is causing the issue. Do you maybe have plans to update the .NET used in the servers to .NET 9.0 ? If not, I can instruct the team to update the software to downgrade to .NET 8.0. Please let me know what works best for you! Thank you very much for your help! Best, Meriem Le jeu. 13 mars 2025 ? 08:46, Kern, Lori <Lori.Shepherd at roswellpark.org> a ?crit :
After a package is submitted to Bioconductor it runs on the daily build and not on demand builds that occurred during the submission process. I'm not sure which build report you are looking but the devel is still ERRORing across all platforms with the latest version that is pushed to git.bioconductor.org
The version bump is included. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
Meriem
Bahda <meriembahda at gmail.com> *Sent:* Thursday, March 13, 2025 12:13 AM *To:* bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* [Bioc-devel] New version of rmspc - error Dear Community, I submitted a recent version of the rmspc package following an update we made to package. I followed the guidelines specified when updating a bioconductor package. However, I didn't get an automatic email when I pushed the updated
package
to Bioconductor and I don't see those changes reflected in the latest
built
report ( I'm getting a Build Error in all the servers . I did bump to a
new
version of the package.
Any help would be appreciated!
Thank you for your help!
Best,
*Meriem BAHDA*
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
--
*Meriem BAHDA*
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!LRXxDv2l!Szp5Ml3D7Xc0R_jdK3lEePioXn1UcWl8AbY-fed4ZEdmmepB0ZG9MMhN5hxEPtIBLi9f59R9kaS0SBGIvn0JMaDYO00qDAw$
*Meriem BAHDA* [[alternative HTML version deleted]]