Is there an open github repository where this can be examined as a work
in progress? If so please let us know and I and likely others will take a
look
and make recommendations.
On Mon, Aug 5, 2019 at 6:55 AM Dermot Harnett <dermot.p.harnett at gmail.com
Hi
I've been put in charge of trying to clean up a package produced in my
into bioconductor compatible code.
The package consists of a a few functions (which process annotation,
process bam files, and then create a html report, respectively). Each of
these functions necessarily take a long time aas they have to traverse a
bam file several times, create lots of plots etc.
It's proving extremely difficult, even with subsets of the data, to
a vignette which can be run in the the bioconductor standard 10minutes.
What would you recommend in these circumstances? Is it possible for the
package to have a workflow vignette instead of a standard vignette?
Best
Dermot Harnett, PhD
Ohler Group
BIMSB, Berlin
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