Hi Nico,
----- Original Message -----
From: "Nicolas Delhomme" <nicolas.delhomme at umu.se>
To: "Dan Tenenbaum" <dtenenba at fhcrc.org>
Cc: "Ashley Ng" <ang at wehi.edu.au>, bioc-devel at r-project.org
Sent: Tuesday, April 15, 2014 7:39:00 AM
Subject: Re: [Bioc-devel] biocLite ?no packages in repository? error
Hej Dan!
With regards to this, do you have any timeline - since you got
Maverick machines now :-) - as to when Maverick will be supported?
We have ordered the machines. I have just asked for an update on the order status. As soon as the machines arrive, are configured, and start building, we'll be able to support binary Mavericks packages. We'll make an announcement on this list.
Note that even CRAN's builds of Mavericks packages are not complete and this may impact Bioconductor's builds, but we'll work with CRAN to resolve this.
As a feedback, compiling R and installing from source on Maverick has
been fairly stable for me - just recently encountered a problem with
compiling mzR but got a workaround from the package developers - and
this since Maverick is out (October last year).
Yes, it's mostly a (lack of) hardware problem, not a technical one.
Dan
Cheers,
Nico
---------------------------------------------------------------
Nicolas Delhomme
The Street Lab
Department of Plant Physiology
Ume? Plant Science Center
Tel: +46 90 786 7989
Email: nicolas.delhomme at umu.se
SLU - Ume? universitet
Ume? S-901 87 Sweden
---------------------------------------------------------------
On 15 Apr 2014, at 16:28, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
From: "Dan Tenenbaum" <dtenenba at fhcrc.org>
To: "Ashley Ng" <ang at wehi.EDU.AU>
Cc: bioc-devel at r-project.org
Sent: Tuesday, April 15, 2014 7:26:11 AM
Subject: Re: biocLite ?no packages in repository? error
Hi Ashley,
----- Original Message -----
From: "Ashley Ng" <ang at wehi.EDU.AU>
To: dtenenba at fhcrc.org
Cc: bioc-devel at r-project.org
Sent: Tuesday, April 15, 2014 3:04:23 AM
Subject: biocLite ?no packages in repository? error
Hi Dan
I seem to getting a ?no packages in repository? biocLite error
after
installing R 3.10 and trying to upgrade packages:
Bioconductor version 2.14 (BiocInstaller 1.13.3), ?biocLite for
help
R version 3.1.0 (2014-04-10)
Platform: x86_64-apple-darwin13.1.0 (64-bit)
locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods
base
other attached packages:
[1] BiocInstaller_1.13.3
loaded via a namespace (and not attached):
[1] tools_3.1.0
What is the result of the following command:
library(BiocInstaller)
biocinstallRepos()
?
Dan
Cheers
Ashley Ng
Clinical Haematologist and Post Doctoral Fellow
The Royal Melbourne Hospital
The Walter and Eliza Hall Institute of Medical Research, Cancer
and
Haematology Division
1G Royal Parade
Parkville, 3050
Melbourne, Australia