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R-1.6.2 is released

4 messages · Peter Dalgaard, Douglas Bates, Dirk Eddelbuettel

#
I've rolled up R-1.6.2.tgz a short while ago. This is a minor upgrade,
fixing an assortment of bugs.

You can get it from the developer site at

http://cvs.r-project.org/pub/CRAN/src/base/R-1.6.2.tgz

or wait for it to be mirrored at a CRAN site near you. Binaries for
various platforms will appear in due course.
 
There is also a version split for floppies, but due to the inclusion
of recommended packages as binary .tar.gz files, we are no longer
providing a patch file.

These are the md5sums for the freshly created files, in case you wish
to check that they are uncorrupted:

174e6280aa2f2102388ca9c7930b1843  R-1.6.2.tgz
8d202e80aa52e3fc877994f1a76fc198  R-1.6.2.tgz-split.aa
8153444a5c0bea85ede04e0ced76b7de  R-1.6.2.tgz-split.ab
b1d88962c538ab9fccc81161c2a81a02  R-1.6.2.tgz-split.ac
90fb143e6a3289d472817e5218d2423d  R-1.6.2.tgz-split.ad
0e55aacd637415053f18651ecdc73c3a  R-1.6.2.tgz-split.ae
1c910fa9fe45fd5a15d6b3893c99f7fc  R-1.6.2.tgz-split.af
8706e736541bf60b717e0b56e8a405a0  R-1.6.2.tgz-split.ag

        For the R Core Team,

        Peter D.


Here's the relevant part of the NEWS file:


                CHANGES IN R VERSION 1.6.2


BUG FIXES

    o   plot.stepfun() now obeys a `ylim=.' specification.

    o   removeClass() does a better job of removing inheritance
        information.

    o   setIs() will not allow mismatched representations between two
        classes (without an explicit coerce method).

    o   The code underlying polygon drawing contained a memory leak.
        This showed up in persp, but did not affect other graphics
        functions.  It is now possible to draw big DEMs.

    o   logLik.nls() gave wrong df. (PR#2295)

    o   rbind() with a mixture of data frames and matrices treated the
        matrices as vectors. (PR#2266)

    o   stripchart(method="stack") was not handling missing values. (PR#2018)

    o   Arithmetic functions such as log() lost the object bit from
        classed objects if coercion was needed. (PR#2315)

    o   exp_rand would go into an infinite loop if unif_rand returned 0.

    o   formatC(x, format="fg") could return exponential format if
        rounding pushed x over a positive power of 10. (PR#2299)

    o   attr(x, foo) used partial matching for `foo' (even though not
        documented to do so), and failed to find `foo' if there were
        two or more partial matches before the exact match in the list
        of attributes.

    o   Rdconv now creates direct HTML hyperlinks when linking to
        documentation in the same package.  The code now ensures that
        links which can be resolved within the package are so resolved,
        even when there are possible resolutions in other packages.

    o   If readBin(what=character()) is used incorrectly on a file which
        does not contain C-style character strings, warnings (usually
        many) are now given.

    o   Building libR.so with the zlib in the R sources was not
        finding the local zlib headers.

    o   system(intern=TRUE) has an undocumented line length limit of
        119 chars both on Unix and Windows.  The limit is now 8096 and
        documented.  On Unix (only) every 120th character used to be
        discarded.

    o   plot.POSIX[cl]t were not passing graphics parameters on to
        axis.POSIXct.

    o   On some HP-UX systems, installed scripts were not executable
        when using the BSD-compatible install system program found by
        configure.  We now always use install-sh on HP-UX. (PR#2091)

    o   c() was converting NA names to "NA": now proper NA strings are
        used wherever possible. (PR#2358)

    o   A typo was causing segfaults when using data.entry under SuSE.
#
Peter Dalgaard BSA <p.dalgaard at biostat.ku.dk> writes:
Sorry, not quite... This is it:


                CHANGES IN R VERSION 1.6.2


BUG FIXES

    o   plot.stepfun() now obeys a `ylim=.' specification.

    o   removeClass() does a better job of removing inheritance
        information.

    o   setIs() will not allow mismatched representations between two
        classes (without an explicit coerce method).

    o   The code underlying polygon drawing contained a memory leak.
        This showed up in persp, but did not affect other graphics
        functions.  It is now possible to draw big DEMs.

    o   logLik.nls() gave wrong df. (PR#2295)

    o   rbind() with a mixture of data frames and matrices treated the
        matrices as vectors. (PR#2266)

    o   stripchart(method="stack") was not handling missing values. (PR#2018)

    o   Arithmetic functions such as log() lost the object bit from
        classed objects if coercion was needed. (PR#2315)

    o   exp_rand would go into an infinite loop if unif_rand returned 0.

    o   formatC(x, format="fg") could return exponential format if
        rounding pushed x over a positive power of 10. (PR#2299)

    o   attr(x, foo) used partial matching for `foo' (even though not
        documented to do so), and failed to find `foo' if there were
        two or more partial matches before the exact match in the list
        of attributes.

    o   Rdconv now creates direct HTML hyperlinks when linking to
        documentation in the same package.  The code now ensures that
        links which can be resolved within the package are so resolved,
        even when there are possible resolutions in other packages.

    o   If readBin(what=character()) is used incorrectly on a file which
        does not contain C-style character strings, warnings (usually
        many) are now given.

    o   Building libR.so with the zlib in the R sources was not
        finding the local zlib headers.

    o   system(intern=TRUE) has an undocumented line length limit of
        119 chars both on Unix and Windows.  The limit is now 8096 and
        documented.  On Unix (only) every 120th character used to be
        discarded.

    o   plot.POSIX[cl]t were not passing graphics parameters on to
        axis.POSIXct.

    o   On some HP-UX systems, installed scripts were not executable
        when using the BSD-compatible install system program found by
        configure.  We now always use install-sh on HP-UX. (PR#2091)

    o   c() was converting NA names to "NA": now proper NA strings are
        used wherever possible. (PR#2358)

    o   A typo was causing segfaults when using data.entry under SuSE.

    o   mostattributes<-() was failing to copy across dimnames when
        one component was NULL, affecting pmax() and pmin() when the
        first argument was a matrix.  (root cause of PR#2357)

    o   The pdf() device now initialises graphical parameters
        properly.  (PR#2281)

    o   Checks in the C code prevent possible memory faults when
        standardGeneric is called invalidly.

    o   Macros NEW_OBJECT (aka NEW) and MAKE_CLASS added; required by
        the .Call interface to generate arbitrary objects.

    o   Problem that prevented package tcltk from working with Tcl/Tk
        8.4 (crash on initialization) resolved.  (Notice that binaries
        may still require an older Tcl/Tk, for example on Windows).

    o   type.convert() was not getting the levels right if passed a
        character vector containing <NA>s, and `na.strings' did not
        contain "NA".  This affected read.table().

    o   Internal match function did not check for nor handle 0-length
        vectors.  (The R function match() did.)  This could cause
        type.convert() to segfault.

    o   The line length limit in output text connections has been
        raised to 8095 chars.

    o   Sweave now uses anonymous file rather than text connections
        to avoid the limits of the latter (see previous item).

    o   parsing did not work on connections when pushback was used (as
        it had never been implemented).  (PR#2396)

    o   max.col() only found NAs in the first column (typo).

    o   Added a workaround for recent versions of glibc (e.g. RedHat 8.0)
        with inconsistent mktime/localtime functions which caused
        conversion to/from POSIXct times prior to 1970-01-01 to be
        inconsistent.  On such platforms this is a run-time test to
        allow e.g. R compiled on RH7.2 to run on RH8.0.

    o   Clipping was not being reset properly between plots on the gtk()
        device (the default under the GNOME interface). (PR#2366)

    o   axis(*, fg= cc) now works (again) the same as axis(*, col = cc).
#
Sources for R-1.6.2 are now available via rsync at rsync.r-project.org

$ rsync rsync.r-project.org::
r-release      	R-1.6.2 sources (current released version - approx 30 MB)
r-patched      	R sources (patched released version - approx 30 MB)
r-devel        	R sources (development version)
r-manuals      	Development sources for manuals for R
r-recommended  	Sources for recommended R packages
xlispstat      	xlispstat sources (development version) CVS tree (approx 12 MB)
CRAN           	Complete CRAN ftp area
Bioc-release   	Bioconductor sources (current release version)
Bioc-devel     	Bioconductor sources (development version)
GGobi          	GGobi sources (devel version)
omega-cvs      	Omega Project for Statistical Computing CVS tree
r-project-web  	Web pages for www.r-project.org and mirrors
Omegahat       	Complete ftp archive for Omegahat
#
Debian packages for the Intel i386 platform have been uploaded to Debian's
master archive server. These packages have been built on Debian's 'testing'
release and will install and run on any 'testing' or 'unstable' system.

Debian 'unstable' packages for most of the other eleven hardware platforms
should be built during the night. 

Intel i386 packages for the more recent Debian 3.0 ('stable') release will
be built over the weekend.  

Regards,  Dirk

Files:
 096452016de9240288b2d21bed604012 1048 math optional r-base_1.6.2-1.dsc
 174e6280aa2f2102388ca9c7930b1843 8659106 math optional r-base_1.6.2.orig.tar.gz 
 8055e3bdfa65d531828dcd5f14300af9 6798 math optional r-base_1.6.2-1.diff.gz
 4f5c91a25dc2f17a78c6045921745ce0 4893338 math optional r-base-core_1.6.2-1_i386.deb
 dae9b95d99ab90c70226ea9ba600bbbd 43134 math optional r-gnome_1.6.2-1_i386.deb
 9ea88b758856bf4a1d43e17cdc064031 119940 math optional r-mathlib_1.6.2-1_i386.deb
 be5cb07b6d462240303eb06cffdc119c 3935108 math optional r-recommended_1.6.2-1_i386.deb
 3300604817c35b1fce7bf18e20584d58 14046 math optional r-base_1.6.2-1_all.deb
 2a903d1d11835881bc76b79f38ef8904 1442 devel optional r-base-dev_1.6.2-1_all.deb 
 e3fc89a5f49e5f1288d71edee6c7ad30 779396 math extra r-base-html_1.6.2-1_all.deb
 48a031ba1725ef57c89670ee717316e6 722702 math extra r-base-latex_1.6.2-1_all.deb 
 234c77226c5906253fafd12badc5bedb 4980892 doc optional r-doc-pdf_1.6.2-1_all.deb 
 d29587c5a22993172222f729bafb752f 299764  doc optional r-doc-html_1.6.2-1_all.deb 
 ce0008a4426938064c7bbc471b182415 310398 doc optional r-doc-info_1.6.2-1_all.deb