Timezone warnings on package install in R-alpha
I'm seeing nothing of the sort with the nightly build of 3.1.0RC, also on 10.9.2. This is a plain-vanilla Xcode+ancillaries build as per Simon's instructions (I think):
pd$ more config.site
r_arch=${r_arch:=x86_64}
CC="gcc -arch $r_arch"
CXX="g++ -arch $r_arch"
F77="gfortran -arch $r_arch"
FC="gfortran -arch $r_arch"
OBJC="gcc -arch $r_arch"
with_blas="-framework vecLib"
with_lapack=yes
so either something is up specifically with gcc-4.8, or you managed to hose your time zone data base somehow (/usr/share/zoneinfo, I suppose).
- Peter D.
On 03 Apr 2014, at 13:24 , Jon Clayden <jon.clayden at gmail.com> wrote:
For what it's worth, this issue persists in R-rc_2014-04-02_r65358. Regards, Jon On 24 March 2014 10:40, Jon Clayden <jon.clayden at gmail.com> wrote:
Dear all, As of the current R alpha release, I'm seeing timezone-related warnings on installing any package (including the recommended ones), which I haven't seen before. For example, [~/Documents/Source/R-alpha]$ bin/R CMD INSTALL ~/git/tractor/lib/reportr * installing to library '/Users/jon/Documents/Source/R-alpha/library' * installing *source* package 'reportr' ... Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'Europe/London' Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'GMT' Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'America/New_York' Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'GMT' Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'America/New_York' ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (reportr) This is R-alpha r65266, built from source on OS X 10.9.2 using gcc 4.8.2. I ran configure with ./configure --with-blas="-framework Accelerate" --with-lapack --with-system-zlib --enable-memory-profiling --with-tcl-config=/System/Library/Frameworks/Tcl.framework/tclConfig.sh --with-tk-config=/System/Library/Frameworks/Tk.framework/tkConfig.sh CC=gcc-4.8 CXX=g++-4.8 OBJC=clang F77=gfortran-4.8 FC=gfortran-4.8 CPPFLAGS="-D__ACCELERATE__" CFLAGS="-mtune=native -g -O2" CXXFLAGS="-mtune=native -g -O2" FFLAGS="-mtune=native -g -O2" FCFLAGS="-mtune=native -g -O2" Session info is R version 3.1.0 alpha (2014-03-23 r65266) Platform: x86_64-apple-darwin13.1.0 (64-bit) locale: [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base I see some related material in the NEWS, but no indication that these warnings are expected. I hope this report is helpful. All the best, Jon
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Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd.mes at cbs.dk Priv: PDalgd at gmail.com