as.vector in R-devel loaded 3/3/2016
Thanks. Indeed I was having a permission issue installing/updating packages and had put a version of Matrix in my personal library which must have been getting loaded ahead of the one in revel library. Sorry for the bother. On Friday, March 4, 2016, Morgan, Martin <Martin.Morgan at roswellpark.org> wrote:
I see as below, where getGeneric and getMethod imply a different signature; the signature is mode="any" for both cases in R version 3.2.3 Patched (2016-01-28 r70038)I don't know how to reproduce Jeff's error, though.
library(Matrix) as.vector
function (x, mode = "any") .Internal(as.vector(x, mode)) <bytecode: 0xe79f88> <environment: namespace:base>
getGeneric("as.vector")
standardGeneric for "as.vector" defined from package "base"
function (x, mode)
standardGeneric("as.vector")
<bytecode: 0x29a6bd0>
<environment: 0x299f988>
Methods may be defined for arguments: x
Use showMethods("as.vector") for currently available ones.
selectMethod("as.vector", "ANY")
Method Definition (Class "internalDispatchMethod"):
function (x, mode)
.Internal(as.vector(x, mode))
<environment: base>
Signatures:
x
target "ANY"
defined "ANY"
sessionInfo()
R Under development (unstable) (2016-02-27 r70232) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.4 LTS locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] Matrix_1.2-4 loaded via a namespace (and not attached): [1] grid_3.3.0 lattice_0.20-33
________________________________________
From: R-devel <r-devel-bounces at r-project.org <javascript:;>> on behalf of
Martin Maechler <maechler at stat.math.ethz.ch <javascript:;>>
Sent: Friday, March 4, 2016 6:05 AM
To: peter dalgaard
Cc: r-devel at r-project.org <javascript:;>; Jeff Laake - NOAA Federal
Subject: Re: [Rd] as.vector in R-devel loaded 3/3/2016
peter dalgaard <pdalgd at gmail.com <javascript:;>>
on Fri, 4 Mar 2016 09:21:48 +0100 writes:
> Er, until _what_ is fixed?
> I see no anomalies with the version in R-pre:
Indeed.
The problem ... I also have stumbled over ..
is that I'm sure Jeff is accidentally loading a different
version of 'Matrix' than the one that is part of R-devel.
Jeff you must accidentally be loading a version Matrix made with
R 3.2.x in R 3.3.0 and that will fail with the as.vector()
mismatch error message.
(and IIRC, you also get such an error message if you load a
3.3.0-built version of Matrix into a non-3.3.0 version of R).
Martin
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