Message-ID: <6c558a4d-d398-28ef-94ed-ab4ee4a639ef@insa-toulouse.fr>
Date: 2023-09-19T15:05:57Z
From: Serguei Sokol
Subject: Strange behaviour of do.call()
In-Reply-To: <a20d1359-7097-42a9-903e-2b505bdb3343@gmail.com>
Le 19/09/2023 ? 16:44, Duncan Murdoch a ?crit?:
> The knitr::kable() function does some internal setup, including
> determining the target format, and then calls an internal function using
>
> ? do.call(paste("kable", format, sep = "_"), list(x = x,
> ??????? caption = caption, escape = escape, ...))
>
> I was interested in setting the `vlign` argument to
> knitr:::kable_latex, using this code:
>
> ? knitr::kable(head(mtcars), format="latex", align = "c", vlign="")
>
> If I debug knitr::kable, I can see that `vlign = ""` is part of
> list(...).? However, if I debug knitr:::kable_latex, I get weird results:
>
> ? > debug(knitr:::kable_latex)
> ? > knitr::kable(head(mtcars), format="latex", align = "c", vlign="")
If I do this in my R v4.3.1 on linux, I get:
> debug(knitr:::kable_latex)
> knitr::kable(head(mtcars), format="latex", align = "c", vlign="")
Error in kable_latex(x = c("Mazda RX4", "Mazda RX4 Wag", "Datsun 710",? :
? unused argument (vlign = "")
By looking at args(knitr:::kable_latex), I see 2 similar arguments
'valign' and 'vline' but no 'vlign'.
Can it be just a typo in your code?
> debugging in: kable_latex(x = c("Mazda RX4", "Mazda RX4 Wag", "Datsun
> 710",
> ? "Hornet 4 Drive", "Hornet Sportabout", "Valiant", "21.0", "21.0",
> ? "22.8", "21.4", "18.7", "18.1", "6", "6", "4", "6", "8", "6",
> ? "160", "160", "108", "258", "360", "225", "110", "110", "93",
> ? "110", "175", "105", "3.90", "3.90", "3.85", "3.08", "3.15",
> ? "2.76", "2.620", "2.875", "2.320", "3.215", "3.440", "3.460",
> ? "16.46", "17.02", "18.61", "19.44", "17.02", "20.22", "0", "0",
> ? "1", "1", "0", "1", "1", "1", "1", "0", "0", "0", "4", "4", "4",
> ? "3", "3", "3", "4", "4", "1", "1", "2", "1"), caption = NULL,
> ????? escape = TRUE, vlign = "")
> debug: {
>
> ? [rest of function display omitted]
>
> I see here that vlign = "" is being shown as an argument. However,
> when I print vlign, sometimes I get "object not found", and somethings
> I get
>
> ? Browse[2]> vline
> ? debug: [1] "|"
Here again, 'vline' is used on purpose instead of 'vlign'?
Best,
Serguei.
>
> (which is what the default value would be).? In the latter case, I
> also see
>
> ? Browse[2]> list(...)
> ? $vlign
> ? [1] ""
>
> i.e. vlign remains part of the ... list, it wasn't bound to the
> argument named vlign.
>
> I can't spot anything particularly strange in the way knitr is
> handling this; can anyone else?? My sessionInfo() is below.
>
> Duncan Murdoch
>
> > sessionInfo()
> R version 4.3.1 (2023-06-16)
> Platform: x86_64-apple-darwin20 (64-bit)
> Running under: macOS Monterey 12.6.9
>
> Matrix products: default
> BLAS:
> /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRblas.0.dylib
>
> LAPACK:
> /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib;
> ?LAPACK version 3.11.0
>
> locale:
> [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
>
> time zone: America/Toronto
> tzcode source: internal
>
> attached base packages:
> [1] stats???? graphics? grDevices utils???? datasets? methods base
>
> loaded via a namespace (and not attached):
> [1] compiler_4.3.1 tools_4.3.1??? knitr_1.44???? xfun_0.40
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
--
Serguei Sokol
Ingenieur de recherche INRAE
Cellule Math?matiques
TBI, INSA/INRAE UMR 792, INSA/CNRS UMR 5504
135 Avenue de Rangueil
31077 Toulouse Cedex 04
tel: +33 5 61 55 98 49
email: sokol at insa-toulouse.fr
https://www.toulouse-biotechnology-institute.fr/en/plateformes-plateaux/cellule-mathematiques/