Implementing R on IBM p690 cluster Jump
Ralf Seppelt wrote:
Dear All, we're trying to implement R on the IBM p690 cluster "Jump" at the research centre in J?lich, Germany (c.f. http://www.fz-juelich.de/nic/Supercomputer/computer-e.html) using the most recent version of R (2.1.0) and precisly following the installation instructions.
How much cpu time for further R development do we get on that machine if we can help? ;-) Uwe Ligges
After ./configure we get the final message:
----------------
R is now configured for powerpc-ibm-aix5.2.0.0
Source directory: .
Installation directory: /usr/local
C compiler: gcc -mno-fp-in-toc -g -O2
C++ compiler: g++ -g -O2
Fortran compiler: f77 -g
Interfaces supported: X11, tcltk
External libraries: readline, BLAS(ESSL)
Additional capabilities: PNG, JPEG, MBCS, NLS
Options enabled: R profiling
Recommended packages: yes
configure: WARNING: you cannot build info or html versions of the R manuals
configure: WARNING: I could not determine a browser
--------------
After make we get
ufzaloe@j36.!:
ufzaloe@j36.!: make
...
gcc -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall
-Wl,-bI:../../../etc/R.exp -L/usr/local/lib -o R_X11.so dataentry.lo
devX11.lo rotated.lo rbitmap.lo -lSM -lICE -lX11 -ljpeg -lpng -lz
ld: 0711-317 ERROR: Undefined symbol: .log10
ld: 0711-317 ERROR: Undefined symbol: .floor
ld: 0711-317 ERROR: Undefined symbol: .libintl_gettext
ld: 0711-317 ERROR: Undefined symbol: .pow
ld: 0711-317 ERROR: Undefined symbol: .sin
ld: 0711-317 ERROR: Undefined symbol: .cos
ld: 0711-317 ERROR: Undefined symbol: .tan
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
information.
collect2: ld returned 8 exit status
make: 1254-004 The error code from the last command is 1.
Stop.
make: 1254-004 The error code from the last command is 2.
Stop.
make: 1254-004 The error code from the last command is 1.
Stop.
make: 1254-004 The error code from the last command is 1.
Stop.
make: 1254-004 The error code from the last command is 1.
---------------
Before bugging the administiors in J?lich, we would like to ask the R
consortium: Are there any related experiences from people who worked on
the implementation of R on different platforms?
Thanks for help
Ralf Seppelt & Carsten Dormann
PS: the configure log-file is attached to this mail.
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./configure
checking build system type... powerpc-ibm-aix5.2.0.0
checking host system type... powerpc-ibm-aix5.2.0.0
loading site script './config.site'
loading build specific script './config.site'
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config.status: creating src/scripts/SHLIB
config.status: creating src/scripts/Sd2Rd
config.status: creating src/scripts/build
config.status: creating src/scripts/check
config.status: creating src/scripts/f77
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tests/Native/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: src/include/config.h is unchanged
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing stamp-h commands
R is now configured for powerpc-ibm-aix5.2.0.0
Source directory: .
Installation directory: /usr/local
C compiler: gcc -mno-fp-in-toc -g -O2
C++ compiler: g++ -g -O2
Fortran compiler: f77 -g
Interfaces supported: X11, tcltk
External libraries: readline, BLAS(ESSL)
Additional capabilities: PNG, JPEG, MBCS, NLS
Options enabled: R profiling
Recommended packages: yes
configure: WARNING: you cannot build info or html versions of the R manuals
configure: WARNING: I could not determine a browser
------------------------------------------------------------------------
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