problem with 'install.packages'
Spencer Graves wrote:
Hi, All:
Is there a way to identify whether any users are using a
particular package in a shared network R installation?
I ask, because we have such a multiple-user installation and when
I tried to install a package using Rgui that was in use by Rterm on a
single-user installation, 'install.packages' deleted the existing
package but failed to install the new version; see below.
I'm concerned especially about the following multiple user
scenario: User A on terminalServer1 tries "install.packages('mvtnorm')"
when user B on terminalServer2 was using 'mvtnorm'; both are using the
same network installation. If the results match my experience on a
single-user installation, the existing version will be deleted but the
new version will NOT be installed. Any subsequent new attempt to access
'mvtnorm' will fail until all current users of 'mvtnorm' quit those
sessions and someone subsequently invokes
Spencer, I am using a script that asks Windows if a file is opened in a subdirectory of the R library I am going to install or update packages in, which basically uses the Windows shell command net file Then simply grep for the package name you want to install...
"install.packages('mvtnorm')". In fact, user B could have disconnected
from that session a month ago, and may have long forgotten the R session
that is still officially active, though perhaps consuming 0 CPU seconds
in the past month!
That's worse and really hard to deal with, I fear. Best wishes, Uwe
Thanks,
Spencer
#######################################
##
## Rgui
##
#######################################
R version 2.6.2 (2008-02-08)
<snip>
> utils:::menuInstallPkgs()
trying URL 'http://cran.cnr.berkeley.edu/bin/windows/contrib/2.6/mvtnorm_0.8-3.zip' Content type 'application/zip' length 214769 bytes (209 Kb) opened URL downloaded 209 Kb package 'mvtnorm' successfully unpacked and MD5 sums checked Warning: cannot remove prior installation of package 'mvtnorm' The downloaded packages are in C:\Documents and Settings\spencerg\Local Settings\Temp\RtmpghgskA\downloaded_packages updating HTML package descriptions
> library(mvtnorm)
Error in library(mvtnorm) : there is no package called 'mvtnorm'
> sessionInfo()
R version 2.6.2 (2008-02-08)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
Error in x[["Version"]] : subscript out of bounds
In addition: Warning message:
In FUN(c("mvtnorm", "tools")[[2L]], ...) :
DESCRIPTION file of package 'mvtnorm' is missing or broken
>
####################################### ## ## Concurrent Rterm session ## ####################################### R version 2.6.2 (2008-02-08) <snip>
> dmvnorm(1:2)
[1] 0.01306423 [1] ".GlobalEnv" "package:mvtnorm" "package:stats" [4] "package:graphics" "package:grDevices" "package:utils" [7] "package:datasets" "package:methods" "Autoloads" [10] "package:base"
> detach() > dmvnorm(1:2)
Error: could not find function "dmvnorm"
> library(mvtnorm)
Error in library(mvtnorm) : there is no package called 'mvtnorm'
> sessionInfo()
R version 2.6.2 (2008-02-08)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
Error in x[["Version"]] : subscript out of bounds
In addition: Warning message:
In FUN(c("mvtnorm", "stepAICc")[[2L]], ...) :
DESCRIPTION file of package 'mvtnorm' is missing or broken
>
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