"could not find function" error in "R CMD check"
On 16/12/2008 10:55 AM, Spencer Graves wrote:
Hi, All:
What might cause "R CMD check" to report, "could not find
function" for a function that has long been in the 'fda' package?
I would guess that you are calling it from within your *.R files. It's
called from a lot of places, so I couldn't spot the one that's causing
the trouble, but something like this could do it:
f <- function() { } # Function is done, by mistake
basisfd() # This is a top level call, not within f
} # Not sure why the parser wouldn't see this
# so this guess may be wrong
In general, you can call functions from within the *.R files, but you
have to be careful to make sure they are already defined (and you
shouldn't count on any side effects from them.
Duncan Murdoch
Both Jim Ramsay in Ottawa, Canada, and I in San Jose, CA, get this
same error. I replicated it with a fresh, anonymous checkout from
R-Forge (svn checkout svn://svn.r-forge.r-project.org/svnroot/fda).
With this, I did "R CMD build pkg", then "R CMD check fda_2.1.0.tar.gz",
with the following result:
D:\spencerg\statmtds\splines\fda\tmp\fda>R CMD check fda_2.1.0.tar.gz
* checking for working pdflatex ... OK
* using log directory 'D:/spencerg/statmtds/splines/fda/tmp/fda/fda.Rcheck'
* using R version 2.8.0 (2008-10-20)
* using session charset: ISO8859-1
* checking for file 'fda/DESCRIPTION' ... OK
* this is package 'fda' version '2.1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking for .dll and .exe files ... OK
* checking whether package 'fda' can be installed ... ERROR
Installation failed.
See 'D:/spencerg/statmtds/splines/fda/tmp/fda/fda.Rcheck/00install.out'
for deta
ils.
####################################
"00install.out" is as follows:
####################################
installing R.css in D:/spencerg/statmtds/splines/fda/tmp/fda/fda.Rcheck
---------- Making package fda ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing demos
installing inst files
installing data files
preparing package fda for lazy loading
Loading required package: splines
Loading required package: zoo
Attaching package: 'zoo'
The following object(s) are masked from package:base :
as.Date.numeric
Error in basisfd(type = type, rangeval = rangeval, nbasis = nbasis,
params = params, :
could not find function "use.proper.basis"
Error: unable to load R code in package 'fda'
Execution halted
make[2]: *** [lazyload] Error 1
make[1]: *** [all] Error 2
make: *** [pkg-fda] Error 2
*** Installation of fda failed ***
Removing 'D:/spencerg/statmtds/splines/fda/tmp/fda/fda.Rcheck/fda'
####################################
Both "basisfd" and "use.proper.basis" have been in the "fda"
package for years and have passed "R CMD check" many times. I'm running
Windows XP Pro and Jim is running Vista.
Any suggestions?
Thanks,
Spencer Graves
sessionInfo()
R version 2.8.0 (2008-10-20)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
>
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