failure of make check-all

Peter,
  Retry how much of it?  That is, where does it go in the sequence 
from svn up to make check?  I'll update my notes so as to do it 
correctly.

In any case, I put it first and reran the whole command chain.  I had 
recently upgraded linux from 14.xx LTS to 16.04 LTS so it makes sense 
to start over.  This removed the large diff in base-Ex.Rout from the 
first part of the log, but the terminal error still remains:

make[3]: Leaving directory '/usr/local/src/R-devel/tests'
make[3]: Entering directory '/usr/local/src/R-devel/tests'
running code in 'reg-tests-3.R' ... OK
  comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK
running code in 'reg-examples3.R' ...Makefile.common:98: recipe for 
target 'reg-examples3.Rout' failed
make[3]: *** [reg-examples3.Rout] Error 1
make[3]: Leaving directory '/usr/local/src/R-devel/tests'
Makefile.common:273: recipe for target 'test-Reg' failed

Here are lines 97-100 of tests/Makefile.common:

.R.Rout:
    @rm -f $@ $@.fail $@.log
    @$(ECHO) $(ECHO_N) "running code in '$<' ...$(ECHO_C)" > $@.log
    @$(R) < $< > $@.fail 2>&1 || (cat $@.log && rm $@.log && exit 1)


There is one complier warning message, it prints in pink so as not to 
miss it!

main.c: In function ?dummy_ii?:
main.c:1669:12: warning: function returns address of local variable 
[-Wreturn-local-addr]
     return (uintptr_t) &ii;

-------------

So as to be more complete I did "cd tests; R" and 
source("reg-examples3.R"), and lo and behold the error is

source('reg-examples3.R')

Loading required package: MASS
Loading required package: survival
Error in fitter(X, Y, strats, offset, init, control, weights = 
weights,  :
  object 'Ccoxmart2' not found

Looking at src/coxmart2.c and src/init.c I don't see anything 
different than the other dozen .C routines in my survival package.  
The file tests/book7.R in the package exercises this routine, and CMD 
check passes.

Hints?

Terry T.






On 04/06/2017 07:52 AM, peter dalgaard wrote:

You may want to retry that after a make distclean, in case anything 
changed in the toolchain.

-pd