R-devel/Linux x64/Sun Studio 12: Problem with Matrix
This seems to be a problem with your OS installation. I have gannet% file /lib64/libpthread.so.0 /lib64/libpthread.so.0: symbolic link to `libpthread-2.9.so' gannet% file /lib64/libpthread-2.9.so /lib64/libpthread-2.9.so: ELF 64-bit LSB shared object, x86-64, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.9, not stripped gannet% rpm -q --whatprovides /lib64/libpthread-2.9.so glibc-2.9-3.x86_64 and of course building (current) Matrix works for me.
On Sat, 21 Feb 2009, Thomas Petzoldt wrote:
Dear Developers, motivated by the new Sun Studio checks I compiled R-devel and several of our packages with Sun Studio 12 on Fedora x64. Everything worked fine and R-devel runs, with the exception of package Matrix where compilation crashes with the following message. The error occurs during building of the recommended packages and also if Matrix is compiled separately: [...] CC -G -lCstd -L/opt/sun/sunstudio12/lib/amd64 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o CHOLMOD.a COLAMD.a AMD.a -L/home/user/R/R-devel/lib -lRlapack -L/home/user/R/R-devel/lib -lRblas -R/opt/sun/sunstudio12/lib/amd64:/opt/sun/sunstudio12/lib/amd64:/opt/sun/lib/rtlibs/amd64:/opt/sun/lib/rtlibs/amd64 -L/opt/sun/sunstudio12/rtlibs/amd64 -L/opt/sun/sunstudio12/prod/lib/amd64 -lfui -lfai -lfsu -lmtsk -lpthread -lm /opt/sun/sunstudio12/prod/lib/amd64/libc_supp.a /lib64/libpthread.so.0: file not recognized: File format not recognized make: *** [Matrix.so] Error 1 ERROR: compilation failed for package ?Matrix? * Removing ?/home/user/R/R-devel/library/Matrix? Can someone help me or give me a pointer what I'm making wrong? How can I get/include the missing shared library? Many thanks in advance Thomas Petzoldt #file: config.site CC=cc CFLAGS="-xO5 -xc99 -xlibmil -nofstore" CPICFLAGS=-Kpic F77=f95 FFLAGS="-O5 -libmil -nofstore" FPICFLAGS=-Kpic CXX=CC CXXFLAGS="-xO5 -xlibmil -nofstore" CXXPICFLAGS=-Kpic FC=f95 FCFLAGS=$FFLAGS FCPICFLAGS=-Kpic LDFLAGS=-L/opt/sun/sunstudio12/lib/amd64 SHLIB_LDFLAGS=-shared SHLIB_CXXLDFLAGS="-G -lCstd" SHLIB_FCLDFLAGS=-G SAFE_FFLAGS="-O5 -libmil" platform 86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status Under development (unstable) major 2 minor 9.0 year 2009 month 02 day 20 svn rev 47964 language R version.string R version 2.9.0 Under development (unstable) (2009-02-20 r47964)
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