NOTE: unstated dependencies in examples
On 10/13/2011 11:34 AM, Uwe Ligges wrote:
I looked at the code and since this is not that trivial to change, I think we can well live with typing grep -r gplots ./man which is not too hard to run on the source package, I believe. Best wishes, Uwe
Yes, that's quite easy, if I wanted to search for files mentioning gplots. However, the NOTE was misleading: 'library' or 'require' calls not declared from: gplots sp suggesting that I had used a function from those packages somewhere without a library() or require(). It turned out that I had just omitted those packages from the Suggests: line in DESCRIPTION. So, perhaps it would be more informative to say: 'library' or 'require' calls not declared in Depends: or Suggests: from: gplots sp -Michael
On 13.10.2011 03:00, Yihui Xie wrote:
You have this in Jevons.Rd:
# show as balloonplots
if (require(gplots)) {
and this in Snow.Rd:
%\dontrun{
library(sp)
It will certainly be helpful if R CMD check can provide more
informative messages (in this case, e.g, point out the Rd files).
Regards,
Yihui
--
Yihui Xie<xieyihui at gmail.com>
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Wed, Oct 12, 2011 at 11:33 AM, Michael Friendly<friendly at yorku.ca>
wrote:
Using R 2.13.1, I am now getting the following NOTE when I run R CMD check on my HistData package * checking for unstated dependencies in examples ... NOTE 'library' or 'require' calls not declared from: gplots sp Under R 2.12.x, I didn't get these notes. I have ~ 25 .Rd files in this package, and AFAICS, every example uses library or require for the functions used; the DESCRIPTION file has the long list of Suggests, which previously was sufficient for packages used in examples. Suggests: gtools, KernSmooth, maps, ggplot2, proto, grid, reshape, plyr, lattice, ReadImages, car But I have no way to find the .Rd file(s) that triggered this note. What is the tool used in R CMD check to make this diagnosis? It would be better if this reported the .Rd file(s) that triggered this note. Is it possible that this note could be specious? -Michael -- Michael Friendly Email: friendly AT yorku DOT ca Professor, Psychology Dept. York University Voice: 416 736-5115 x66249 Fax: 416 736-5814 4700 Keele Street Web: http://www.datavis.ca Toronto, ONT M3J 1P3 CANADA
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Michael Friendly Email: friendly AT yorku DOT ca Professor, Psychology Dept. York University Voice: 416 736-5115 x66249 Fax: 416 736-5814 4700 Keele Street Web: http://www.datavis.ca Toronto, ONT M3J 1P3 CANADA