Problem with table

n 19/03/2012 17:01, Terry Therneau wrote:

R version 2.14.0, started with --vanilla

table(c(1,2,3,4,NA), exclude=2, useNA='ifany')

1 3 4 <NA>
1 1 1 2

This came from a local user who wanted to remove one particular response
from some tables, but also wants to have NA always reported for data
checking purposes.
I don't think the above is what anyone would want.

You have not told us what you want!

Want: that the resulting table exclude values of "2" from the printout, 
while still reporting NA.  This is what the local user expected, the one 
who came to me with their query.

There are lots of ways to get the program to do the right thing, the 
simplest is
      table(c(1,2,3,4,NA), exclude=2)     # keeping the default for useNA

You show another below.

Try

 table(as.factor(c(1,2,3,4,NA)), exclude=2, useNA='ifany')

   1    3    4 <NA>
   1    1    1    1

Note carefully how 'exclude' is defined:

 exclude: levels to remove from all factors in ?...?. If set to ?NULL?,
          it implies ?useNA="always"?.

As you did not specify a factor, 'exclude' was used in forming the 
'levels'.

That is almost a "legal loophole" reading of the manual.  I would never 
have seen through to that level of subtlety.  A primary reason is that a 
simple test shows that exclude works on non-factors.

I'm not sure what the best course of action is.  What I've reported is a 
case where use of the options in a fairly obvious way gives an 
unexpected answer.  On the other hand, I have never  before seen or 
considered the case where someone wanted to exclude an actual data level 
from table: I myself would always have removed a column from the 
result.   If fixing this causes other problems, then perhaps we just 
give up on this rare case.

As to our local choices, we figured out a way to make display of NA the 
default without causing the above problem.   As is often the case, a 
fairly simple solution became obvious to us about 30 minutes after 
submitting a question to the list.

Terry T.