Lubuntu 13.04 raring ringtail: Problems installing pnmath_0.0-4
AFAIK pnmath is not a package on a public repository, and it seems it is using R internals not part of the API and not exposed in R 3.0.0. I presume you got this from ~luke/R/experimental ... the clue is in the directory name. My understanding was that this would eventually be merged into R rather than released as a package. If you really want to use it you will need to modify the R sources to unhide PRIMFUN and SET_PRIMFUN and re-compile.
On 26/04/2013 19:39, Kjetil Halvorsen wrote:
Hola! This is 64bit Lubuntu 13.04, with R-3.0.0 installed from deb http://ppa.launchpad.net/marutter/rrutter/ubuntu raring main via synaptic. gcc --version gcc (Ubuntu/Linaro 4.7.3-1ubuntu1) 4.7.3
sessionInfo()
R version 3.0.0 (2013-04-03) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] MASS_7.3-26 loaded via a namespace (and not attached): [1] compiler_3.0.0 fortunes_1.5-0 tools_3.0.0
I am trying to install pnmath from the commandline (outside R), this is what happens: kjetil at kjetil-HP-Pavilion-dv4-Notebook-PC:~/R/src$ sudo R CMD INSTALL pnmath_0.0-4.tar.gz * installing to library ???/usr/local/lib/R/site-library??? * installing *source* package ???pnmath??? ... ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -O2 -pipe -g -c bd0.c -o bd0.o ... ... ... installing to /usr/local/lib/R/site-library/pnmath/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/local/lib/R/site-library/pnmath/libs/pnmath.so': /usr/local/lib/R/site-library/pnmath/libs/pnmath.so: undefined symbol: PRIMFUN Error: loading failed Execution halted ERROR: loading failed * removing ???/usr/local/lib/R/site-library/pnmath??? I have installed sufficient libraries as to compile R itself from source without problems! Kjetil [[alternative HTML version deleted]]
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