split() bug? Inconsistent Windows/Linux behavior.
This is now fixed in R-devel (revision 51908), and R-patched (r51909). Thanks Jay for the nice reproducible example, and thanks Matt for localizing it to the interaction() function. Duncan Murdoch
On 04/05/2010 4:37 PM, Jay Emerson wrote:
I didn't see anything on this in the bug reports, and a search of the archives had lots of false positives when searching on "split" to be helpful. I don't view this as particularly interesting or useful, but wanted to report it because I stumbled on it (and don't remember ever seeing "invalid permissions" as part of a segfault). Yes, I realize this is a silly example that you wouldn't actually do, but... there may be other more interesting cases with the same problem. The following was R-2.10.0 on Linux (with a Windows-64 2.11.0 difference to follow below):
data(iris)
split(1:nrow(iris), list(iris[,1], iris[,2]))
*** caught segfault *** address 0x7fc806cd3d0c, cause 'invalid permissions' Traceback: 1: split.default(1:nrow(iris), list(iris[, 1], iris[, 2])) 2: split(1:nrow(iris), list(iris[, 1], iris[, 2])) Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace In contrast, R-2.11.0 in Windows-64:
data(iris)
split(1:nrow(iris), list(iris[,1], iris[,2]))
Traceback: 1: split.default(1:nrow(iris), list(iris[, 1], iris[, 2])) 2: split(1:nrow(iris), list(iris[, 1], iris[, 2])) Error in split.default(1:nrow(iris), list(iris[, 1], iris[, 2])) : caught access violation - continue with care However, the same commands with drop=TRUE returns something, though the answers differ. In Linux:
a <- split(1:nrow(iris), list(iris[,1], iris[,2]), drop=TRUE)
length(a)
[1] 116 And in Windows, differing only in the extra returned element, which I don't think should probably be part of the answer (there are no missing values in the iris data):
a <- split(1:nrow(iris), list(iris[,1], iris[,2]), drop=TRUE)
length(a)
[1] 117
a[117]
$<NA> [1] 16 -- John W. Emerson (Jay) Associate Professor of Statistics Department of Statistics Yale University http://www.stat.yale.edu/~jay
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