documentation for 'open': some clarification?
Here is an example:
# read and print first 10 lines one by one
# the next two lines could be collapsed into con <- file("myfile", r)
con <- file("myfile")
open(con)
for(i in 1:10) print(readLines(con, n=1))
close(con)
Also its possible that you may not need open. For example,
one can just read it all in at once like this:
mylines <- readLines("myfile")
# and now mylines[1] is the first line, etc.
# or
my.numbers <- scan("myfile")
# or
my.table <- read.table("myfile")
On 4/14/05, Na Li <nali@umn.edu> wrote:
I'm been doing more and more of file text parsing inside R instead of
coping with Perl. For that, I need open a file and read it line-by-line.
I found the documentation for 'open' isn't very clear.
Right now it has
,----[ *help(R)[open]* ]
| 'open' opens a connection. In general functions using connections
| will open them if they are not open, but then close them again, so
| to leave a connection open call 'open' explicitly.
`----
It seems that one has to call 'open' to open a live connection that can be
parsed line by line (using readLines() or scan() to read). But open()
cannot be directly applied to a file name.
In fact, one only needs supply the 'open' argument in file() with
something other than the empty string,
,----
| > con <- file ("S200.dat")
| > isOpen (con)
| [1] FALSE
| > con <- file ("S200.dat", open = "r")
| > isOpen (con)
| [1] TRUE
`----
It is not clear to me how 'open()' is supposed to be used. It took me a
while to figure this out and I thought it might be worthwhile to add one
sentence or two to make it more clear in the doc.
Cheers,
Michael
--
Na (Michael) Li, Ph.D.
Division of Biostatistics A443 Mayo Building, MMC 303
School of Public Health 420 Delaware St SE
University of Minnesota Minneapolis, MN 55455
Phone: (612) 626-4765 Email: nali@umn.edu
Fax: (612) 626-0660 http://www.biostat.umn.edu/~nali
GPG Public Key:
http://www.umn.edu/lookup?SET_INSTITUTION=UMNTC&UID=nali&show_pgp=1
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