Deferred Default Marker
Terry, I don't see the problem in R 2.11.0 or R 2.10.1 Patched (session info for R 2.10.1 below) with Windows (Vista). I do get warnings about kinship having been built under R 2.11.0 when I use R 2.10.1. But I notice that your version of kinship looks somewhat dated. Is that intentional? -Peter Ehlers > sessionInfo() R version 2.10.1 Patched (2010-01-05 r50896) i386-pc-mingw32 locale: [1] LC_COLLATE=English_Canada.1252 LC_CTYPE=English_Canada.1252 [3] LC_MONETARY=English_Canada.1252 LC_NUMERIC=C [5] LC_TIME=English_Canada.1252 attached base packages: [1] splines stats graphics grDevices utils datasets methods [8] base other attached packages: [1] kinship_1.1.0-23 lattice_0.18-3 nlme_3.1-96 survival_2.35-8 loaded via a namespace (and not attached): [1] grid_2.10.1
On 2010-04-23 9:20, Terry Therneau wrote:
I've finally narrowed down a puzzling problem: here is the short test case. tmt34% R --vanilla R version 2.10.0 (2009-10-26) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0
temp<- matrix(runif(50), ncol=2) t(temp) %*% temp
[,1] [,2] [1,] 7.916016 6.049698 [2,] 6.049698 7.650694
library(kinship)
Loading required package: survival Loading required package: splines Loading required package: nlme Loading required package: lattice
t(temp) %*% temp
`__Deferred_Default_Marker__` ----------------------------------------- Within the library is a definition of %*% for bdsmatrix objects, which is perhaps the issue. But I'm only guessing since I don't have a clear idea what the error message means. Any hints are appreciated. The new coxme/bsdmatrix packages need only a couple more functions to be a complete replacement for kinship, at which point we will depreciate it. (Pedigrees and plotting were finished last weekend!) But I can't quite do that yet. The error does not arise with these newer libraries. There have been no changes to kinship for some time. Terry Therneau
sessionInfo()
R version 2.10.0 (2009-10-26) x86_64-unknown-linux-gnu locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=C [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] splines stats graphics grDevices utils datasets methods [8] base other attached packages: [1] kinship_1.1.0-11 lattice_0.17-26 nlme_3.1-96 survival_2.35-9 loaded via a namespace (and not attached): [1] grid_2.10.0
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Peter Ehlers University of Calgary