Dear All,
Just when I thought I had the plague of gfortran-9 under control, I made the tactical error
of allowing my mac mini to ?upgrade? to macOS 10.14.6 which apparently also upgraded
Xcode to 10.3. In consequence I?m having difficulty building my packages. The current
symptom is:
/usr/local/clang7/bin/clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/clang7/include/c++/v1 -fPIC -Wall -g -O2 -c mcmb.c -o mcmb.o
In file included from mcmb.c:11:
/usr/local/clang7/include/c++/v1/stdio.h:108:15: fatal error: 'stdio.h' file not found
#include_next <stdio.h>
^~~~~~~~~
My first thought was I should install Simon?s clang-7.0.0 and gfortran-6.1 packages
which I dutifully did. The next thought was to update my ~/.R/Makevars file to:
CC=/usr/local/clang7/bin/clang
CXX=/usr/local/clang7/bin/clang++
LDFLAGS=-L/usr/local/clang7/lib
CPPFLAGS=-I/usr/local/clang7/include/c++/v1
FC=/usr/local/gfortran/bin/gfortran
FLIBS=-L/usr/local/gfortran/lib -lgfortran
Further googling has left me unenlightened? oh, and I?m running
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Roger Koenker
r.koenker at ucl.ac.uk
Department of Economics, UCL
London WC1H 0AX.
#include_next <stdio.h> not found
2 messages · Roger Koenker, Roy Mendelssohn - NOAA Federal
Hi Roger: This came up in the r-sig-mac list. Try removing the CPPFLAGS. Updates to Xcode appear to erase the headers where you are pointing to. The CRAN flags that Simon uses point elsewhere. Look at the r-sig-mac under topic "Xcode 10.3 and header flles". HTH, -Roy
On Aug 7, 2019, at 8:46 AM, Koenker, Roger W <rkoenker at illinois.edu> wrote:
Dear All,
Just when I thought I had the plague of gfortran-9 under control, I made the tactical error
of allowing my mac mini to ?upgrade? to macOS 10.14.6 which apparently also upgraded
Xcode to 10.3. In consequence I?m having difficulty building my packages. The current
symptom is:
/usr/local/clang7/bin/clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/clang7/include/c++/v1 -fPIC -Wall -g -O2 -c mcmb.c -o mcmb.o
In file included from mcmb.c:11:
/usr/local/clang7/include/c++/v1/stdio.h:108:15: fatal error: 'stdio.h' file not found
#include_next <stdio.h>
^~~~~~~~~
My first thought was I should install Simon?s clang-7.0.0 and gfortran-6.1 packages
which I dutifully did. The next thought was to update my ~/.R/Makevars file to:
CC=/usr/local/clang7/bin/clang
CXX=/usr/local/clang7/bin/clang++
LDFLAGS=-L/usr/local/clang7/lib
CPPFLAGS=-I/usr/local/clang7/include/c++/v1
FC=/usr/local/gfortran/bin/gfortran
FLIBS=-L/usr/local/gfortran/lib -lgfortran
Further googling has left me unenlightened? oh, and I?m running
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Roger Koenker
r.koenker at ucl.ac.uk
Department of Economics, UCL
London WC1H 0AX.
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
********************** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ********************** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center ***Note new street address*** 110 McAllister Way Santa Cruz, CA 95060 Phone: (831)-420-3666 Fax: (831) 420-3980 e-mail: Roy.Mendelssohn at noaa.gov www: http://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected" "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.