Full_Name: Reinhold Bader
Version: 2.1.0
OS: SLES 9
Submission from: (NULL) (129.187.48.1)
I tried to build R using the Intel compilers (icc, ifort) and the Math Kernel
Libraries
for BLAS/LAPACK
Optimizations used were -O3, and the
FPICFLAGS="-fpic"
was exported.
The build failed with the following error message:
...
dumping R code in package 'methods'
Saving namespace image ...
initializing class and method definitions now ...Error in
makePrototypeFromClassDef(properties, ClassDef, immediate, where) :
in making the prototype for class "SClassExtension" elements of the
prototype failed to match the corresponding slot class: coerce (class
?character? ), test (class ?character? ), replace (class ?character? ), simple
(class ?character? ), dataPart (class ?character? )
Error: .onLoad failed in 'loadNamespace' for 'methods'
Execution halted
I am not a R specialist; how do I continue from here?
make[4]: *** [../..
Buidling R on Linux (Itanium) fails (PR#7897)
3 messages · Bader@lrz.de, Christophe Pouzat, Ei-ji Nakama
Hi, here is the "configure" command line I used for an Intel PIV processor with icc, ifort and the intel mkl: ./configure CC=icc CFLAGS="-O2 -mp -prec_div" F77=ifort CXX=icc CXXFLAGS="-O2 -mp -prec_div" FFLAGS="-C90 -w90 -w95 -mp -prec_div" CPICFLAGS=-shared CXXPICFLAGS=-shared FPICFLAGS=-shared SHLIB_LDFLAGS=-shared SHLIB_CXXLDFLAGS=-shared --with-blas="-lmkl_lapack -lmkl -lguide -lpthread" In my experience using "FPICFLAGS=-shared" is mendatory to get the compilation working. The other options are mainly there to pass almost all the tests (except one) of "make check". Xtof.
Bader@lrz.de wrote:
Full_Name: Reinhold Bader
Version: 2.1.0
OS: SLES 9
Submission from: (NULL) (129.187.48.1)
I tried to build R using the Intel compilers (icc, ifort) and the Math Kernel
Libraries
for BLAS/LAPACK
Optimizations used were -O3, and the
FPICFLAGS="-fpic"
was exported.
The build failed with the following error message:
...
dumping R code in package 'methods'
Saving namespace image ...
initializing class and method definitions now ...Error in
makePrototypeFromClassDef(properties, ClassDef, immediate, where) :
in making the prototype for class "SClassExtension" elements of the
prototype failed to match the corresponding slot class: coerce (class
?character? ), test (class ?character? ), replace (class ?character? ), simple
(class ?character? ), dataPart (class ?character? )
Error: .onLoad failed in 'loadNamespace' for 'methods'
Execution halted
I am not a R specialist; how do I continue from here?
make[4]: *** [../..
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A Master Carpenter has many tools and is expert with most of them.If you only know how to use a hammer, every problem starts to look like a nail. Stay away from that trap. Richard B Johnson. -- Christophe Pouzat Laboratoire de Physiologie Cerebrale CNRS UMR 8118 UFR biomedicale de l'Universite Paris V 45, rue des Saints Peres 75006 PARIS France tel: +33 (0)1 42 86 38 28 fax: +33 (0)1 42 86 38 30 web: www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
I tried to build R using the Intel compilers (icc, ifort) and the Math Kernel Libraries for BLAS/LAPACK Optimizations used were -O3, and the FPICFLAGS="-fpic" was exported. The build failed with the following error message:
I did not use MKL, but there was a problem to Intel compiler. An as follows memo at that time. Because there is not yet an option restraining an exception in C++ of IA64, icpc is not usable. http://www.nakama.ne.jp/memo/ia64_linux/ -- e-mail : EIJI Nakama <nakama@ki.rim.or.jp>